Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq6 385 6e-102 >seq6 Length=2947581 Score = 385 bits (426), Expect = 6e-102 Identities = 1115/1701 (66%), Gaps = 44/1701 (3%) Strand=Plus/Plus Query 62136 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 62195 ||||| ||||| ||||||||||||||||| | || || ||||||| ||||||| Sbjct 1353392 TGATCAATGAAAATACCCCTGTCTGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 1353451 Query 62196 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGA 62251 || | ||||| || ||||| |||| || ||||| | | || ||| |||| Sbjct 1353452 CATACTGTTTTGTACAACTCCTTTAAG-TCATCTGGTATTTCACTTATATATTGAACACT 1353510 Query 62252 TCCACCATCTGCCAT-AATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 62310 |||| | || || ||| | | || || || |||| |||||| ||| || || Sbjct 1353511 TCCATTGTGAGCTATTAATTGTTGT-TTCATGTCTTCATCCCATAAACCTCTTTCAAATA 1353569 Query 62311 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 62370 || || | | | ||| |||||||| || |||||||||| || ||||| | | | Sbjct 1353570 AATCTTTTAACAAATGGGGATTAACAACGAAAAATTCTCCACTTAAAACTCTTCTATAAT 1353629 Query 62371 AAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 62430 |||||||||| ||||| ||||| | || ||||||||||| | |||||| | ||| |||| Sbjct 1353630 AAATATTACTAGTATATGGTTCAAAGGATTCATTATTTCCAAGAATTTGTGAAGTAGATG 1353689 Query 62431 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTT 62490 |||| ||||||||||| | ||||| ||||| | ||| | | | |||||| ||| Sbjct 1353690 CAGTTGGCATAGGTGCTAATAATAATGAGTTTCTTAAACCATGCTTACGAATTTTAGCTT 1353749 Query 62491 TTAGAGGTTCCCAATTCCAAAGATC-----CGACGGTACAACNNNNNNNNNNNNNNNTTG 62545 ||| ||||||| |||| | | || || | ||| Sbjct 1353750 TTAATTCATCCCAATCCCAATATTTGTTATCAACTTTAG--CATTCCACATATCAAATTG 1353807 Query 62546 TAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAG 62604 || || || | || || | || |||| ||| | || |||||||| | | || Sbjct 1353808 TAATATTCCTTGGCTAGCTGGACT-TCCTTGATAGGATTCATATGGTCCATGTATAGAAG 1353866 Query 62605 CTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTA 62664 | | |||| | | ||||| ||| | || || || ||||| || || | ||||| | Sbjct 1353867 CCAATTCAACAGACATTTCTAAAGCAGCATAGTACATTGTTTCAAATATTCTTTTATTCA 1353926 Query 62665 GATCTTGTGCTTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAA 62722 |||| ||| | ||| | || ||||||| |||| | ||||| | || ||||| Sbjct 1353927 ATTCTTTTGCAGCATCAGATT--CATATGGATATCTTAATAACATAAATGTATCTGCTAA 1353984 Query 62723 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 62782 |||||| ||||||||||| |||||||| ||||| |||| || ||| || ||| | Sbjct 1353985 TCCTTGTACACCAATACCAATAGGTCTGTGTCTAGTATTGGATGTTTTTGCCTCTTTGAC 1354044 Query 62783 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATC 62842 || |||||||| | ||||||||||||| | ||||||| ||| | ||| | || Sbjct 1354045 TGGGTAATAATTTCTTTCTATAATTTTATCTAAATTTCTGGTAATAATTTTAGTAATTTC 1354104 Query 62843 CTTCAGTTTGAGAAAATCAAATCGCCCATCTATTACAAAC------ATGTTCA--AGGCA 62894 | | || ||||| |||| | | | || |||| || | || | || Sbjct 1354105 ATATAACTTTTTAAAATTAAATT--CTTTTTTTTCCAAATCTACAAATTTACATAAAGCT 1354162 Query 62895 ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 62954 | |||||||| |||||| || || || |||| || | ||||| ||| || ||| Sbjct 1354163 ATAGATGCCAAATTACATACAGCAACTTCATCAGGGGATGTATATTCTATAATTTCACAA 1354222 Query 62955 CAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 63014 || | |||||||| || ||||| |||||||||| ||||||| || ||||| | | Sbjct 1354223 CATAAGTTACTACATTTAATAGTACCTAAATTTTTTTGATTAGATTTAGCATTACAAGAA 1354282 Query 63015 TCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 63074 || ||||| | || |||| ||| ||||| || || || || || || ||| Sbjct 1354283 TCTTTATATAACATATATGGTACACCTGTTTCTATTTGGCTTTGTAATATAGCAAACCAT 1354342 Query 63075 ACGACTCGAGCCTTTATTATAGATTTGTATCTCCT---TTCTCTTTCGTATAGTGTATAC 63131 | || |||| | | | ||| | || | | |||| ||| ||| ||||| Sbjct 1354343 AAATCTTGAGCAAGAACTGT---TTTTTTTCCCATATTTTCTTCTTCATATTTAGTATAT 1354399 Query 63132 AATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATC 63191 ||| ||| || || || ||||| | || || |||||||||| |||||||| Sbjct 1354400 AATTTTTCAAATTCTTCACCCCATGTTTCACTTAAACCTGGACATTCATTTGGACACATT 1354459 Query 63192 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63251 | | ||| | | | || || |||| |||||||| |||||||||| ||| | ||| Sbjct 1354460 AGGGTCCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACAGCA 1354519 Query 63252 ATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 63311 ||||| ||||| | ||| ||| || ||||| ||| || | | ||| | || Sbjct 1354520 TAAAATAAATCTCGTGCTCTTAATTCTTCTTTTCCATGATTTTTCCTTAAATCTAAAAAT 1354579 Query 63312 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 63371 | | ||||| |||||||| ||||| | || | || | | ||| ||||| | Sbjct 1354580 TCAAATATATCTGAATGCCATGGTTCAATATAAACAGCAAAAGATCCTTTACGTTTTCCT 1354639 Query 63372 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63431 || || ||||||| ||||| || |||| |||| ||||||| ||||| || | | ||| Sbjct 1354640 CCACCTTGATCTACATATCTTGCAGTGTCATTAAAAACTCTTAACATAGGTACTAAACCA 1354699 Query 63432 TTTGATATACCATTGGTACCGGAGATAT-AGCTTCCACTGGCACGAATATTACT--AATT 63488 || ||||| ||||||||||| |||| || | | | | ||| || | | Sbjct 1354700 TTAGATATTCCATTGGTACCTCTAATATAAGAAT---TTTGTCCTCTTATGTCTTGTACT 1354756 Query 63489 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAG 63548 | || ||| || || ||||| ||||| ||||| || ||| |||||| || ||| | Sbjct 1354757 GCTACACCAATACCTCCTGCAGTTTTACTAATTAAAGCACATTGTTTTAGAGTTTCAAAA 1354816 Query 63549 ATACCCTCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63607 ||||| || || ||| | |||| | ||| || ||||| ||||||||| | | Sbjct 1354817 ATACCTTCAATAGAATCTGCTTTCATCGATAA-TAAGAAACAAGAAGACATTTGTGGTCT 1354875 Query 63608 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 63667 || || | ||||||||| ||||||| || || || || |||| | ||| | || Sbjct 1354876 GGGCGTCCCTGAATTAAATAATGTAGGAGTTGCATGGGTGAAATATTTCTGAGACATTAA 1354935 Query 63668 ATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 63727 || || || || | |||| |||||||| | ||| || || | | || | ||| Sbjct 1354936 ATGATATGTTTCTAGAGCTTTATCTATATCATCTATATGTATACCAATAGAAACTCTCAT 1354995 Query 63728 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63787 ||| | || ||||||||||||| || || || || || || || || ||| |||| Sbjct 1354996 TAATAAATGTTGAGGTCTTTCAATAATTTTATTATTAATACGTAATAAATAAGATCTTTC 1355055 Query 63788 CAAAGTTTTAAAACCAAAATA 63808 ||| |||||||| |||||||| Sbjct 1355056 CAAGGTTTTAAATCCAAAATA 1355076 Score = 159 bits (176), Expect = 4e-34 Identities = 280/403 (69%), Gaps = 11/403 (3%) Strand=Plus/Plus Query 33475 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33534 |||| ||||| ||| ||||| || || |||||||| ||| || ||||||| Sbjct 128252 TCATTAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACTGCAGGGATATTTTCTATA 128311 Query 33535 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 33594 |||| ||| | || | |||| || |||||||| |||| |||| || || | |||| Sbjct 128312 GCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTA 128371 Query 33595 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33654 || |||| |||||||| ||||| | || || ||||| || || | | || || Sbjct 128372 TATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCT 128431 Query 33655 GTAATCTGTACTTCTGTACAAAATCGTTCC--GCCAAATTTTCATTCACTATTCCGTCAC 33712 || || || || ||| | ||||| || | |||||||| || ||||| || |||| Sbjct 128432 GTTATTTGAACCTCTCTTAAAAAT--TTACTAGCCAAATTCTCTAATACTATACCATCAC 128489 Query 33713 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTA 33771 | ||||||||||| || || ||||| |||||||||| ||| || | || || | ||| Sbjct 128490 TTGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCAT-TGTCATTCAATTTC 128548 Query 33772 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCT 33831 | |||| || | ||| |||||| ||| | |||||| ||||||||||||| || || Sbjct 128549 TCAAAATCTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATGAAGCTTCA 128608 Query 33832 GCCTTTTTATACATGTTCCAGATGTC-----ATAATATTGGAT 33869 || || || || | | ||| | || |||||||||||| Sbjct 128609 GCTTTCTTGTAAAAATCCCAAACTTCAGGATATAATATTGGAT 128651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622940713562280