Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq6 232 2e-55 seq9 113 1e-19 >seq6 Length=2947581 Score = 232 bits (256), Expect = 2e-55 Identities = 608/918 (66%), Gaps = 20/918 (2%) Strand=Plus/Minus Query 363382 TATGATATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGAT 363441 |||||| ||| |||| ||| || |||| | ||| || ||| ||||| ||| | | Sbjct 1355082 TATGATTATTTTGGATTTAAAACCTTGGAAAGATCTTATTTATTACGTATTAATAATAAA 1355023 Query 363442 ATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGAT 363501 ||| ||||| | || || ||| | |||||| | ||| |||||||||| ||| ||| Sbjct 1355022 ATTATTGAAAGACCTCAACATTTATTAATGAGAGTTTCTATTGGTATACATATAGATGAT 1354963 Query 363502 GTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTAT---TCACGCACGCC 363558 | ||| || | ||||||||| | | ||| ||| || |||| || || Sbjct 1354962 ATAGATAAAGCTCTAGAAACATATCA---TTTAATGTCTCAGAAATATTTCACCCATGCA 1354906 Query 363559 ACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTA 363618 || || ||| | | ||| | || || | | ||||| ||||||||||| |||||| | Sbjct 1354905 ACTCCTACATTATTTAATTCAGGGACGCCCAGACCACAAATGTCTTCTTG-TTTCTTATT 1354847 Query 363619 AAA-ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTAT 363677 | ||||| | ||||| || || ||||| ||||| || || || | |||||| | || Sbjct 1354846 ATCGATGAAAGCAGATTCTATTGAAGGTATTTTTGAAACTCTAAAACAATGTGCTTTAAT 1354787 Query 363678 TTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTA 363737 | || | |||||| || ||||||||| | | || | | | | ||| || ||| Sbjct 1354786 TAGTAAAACTGCAGGAGGTATTGGTGTAGCAGTACAAGACATAAGAGGACAAAATTCTTA 1354727 Query 363738 CATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACA 363796 ||| | || || | || ||| || ||||| | || || ||| | | || ||| | Sbjct 1354726 TATTAGAGGTACCAATGGAATA-TCTAATGGTTTAGTACCTATGTTAAGAGTTTTTAATG 1354668 Query 363797 ATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATC 363856 | ||||| || || || || || ||||||||||| || ||||| | |||||| | ||| Sbjct 1354667 ACACTGCAAGATATGTAGATCAAGGTGGAGGAAAACGTAAAGGATCTTTTGCTGTTTATA 1354608 Query 363857 TCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAG 363916 | || || ||| | ||||| ||||| ||| | || | ||||||| ||||||| Sbjct 1354607 TTGAACCATGGCATTCAGATATATTTGAATTTTTAGATTTAAGGAAAAATCATGGAAAAG 1354548 Query 363917 AGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGC 363976 | ||||| | ||||| ||| | || ||||| | |||||| |||| | |||||||||| Sbjct 1354547 AAGAATTAAGAGCACGAGATTTATTTTATGCTGTATGGGTTCCTGATCTTTTTATGAAGA 1354488 Query 363977 GCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCG 364036 | || | | | ||| |||||| | || | || ||| | |||||||||||| | | Sbjct 1354487 GAGTTAAAGAAAATAAAAATTGGACCCTAATGTGTCCAAATGAATGTCCAGGTTTAAGTG 1354428 Query 364037 ATGTATGGGGTGACGACTATG--TTGCTCTATACGAAAAGTATGAATCGGAGGGAAA--- 364091 | ||||||||| || | || | ||||| ||| |||||| || | ||| Sbjct 1354427 AAACATGGGGTGAAGAATTTGAAAAATTATATACTAAA--TATGAA---GAAGAAAATAT 1354373 Query 364092 GGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGA 364151 || || ||| ||| || || | |||||||||| || | | || || || Sbjct 1354372 GGGAAAAAAAACAGTTCTTGCTCAAGATTTATGGTTTGCTATATTACAAAGCCAAATAGA 1354313 Query 364152 GACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCA 364211 ||||| ||| |||||||| || |||||||| || || || || || || | | Sbjct 1354312 AACAGGTGTACCATATATGTTATATAAAGATTCTTGTAATGCTAAATCTAATCAAAAAAA 1354253 Query 364212 CCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGA 364271 | ||||| ||| | || ||| ||||| || ||||| ||||| || | || || Sbjct 1354252 TTTAGGTACTATTAAATGTAGTAACTTATGTTGTGAAATTATAGAATATACATCCCCTGA 1354193 Query 364272 CGAGACTGCCGTATGTAA 364289 || ||| |||||||| Sbjct 1354192 TGAAGTTGCTGTATGTAA 1354175 >seq9 Length=776283 Score = 113 bits (124), Expect = 1e-19 Identities = 353/544 (65%), Gaps = 2/544 (0%) Strand=Plus/Plus Query 111351 GGAATTGTCGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCA 111410 |||||| | |||||| | || ||||||||| | ||| ||||||| ||| || | Sbjct 511552 GGAATTATTGAAGAATTGCTTTGGTTTATTAGAGGAGAAACAAATGGTAATACGCTGTTA 511611 Query 111411 GCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTC-AGTTGG 111469 || ||||||| || ||||| | ||||| | | || ||| ||||| || Sbjct 511612 AATAAGAATGTAAGGATATGGGAAGCTAATGGTACTAGGGAATTTTTAGATAATAGAAAA 511671 Query 111470 TCTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTT 111529 | | || | | |||| ||| | ||||| |||| || ||||||||| | || || Sbjct 511672 TTATTTC-ATAGAGAAGTTAACGATTTAGGACCTATTTATGGTTTTCAATGGAGACATTT 511730 Query 111530 TGGTGCAGACTACAAAACCATGCACGACTCATATGATTCACAGGGAACTGATCAATTACA 111589 || || || || | || ||||| || ||||| | || |||||||||| | Sbjct 511731 CGGAGCTGAATATACAAATATGCATGATAATTATGAAAATAAAGGTGTTGATCAATTAAA 511790 Query 111590 GAATGTCATTGATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATG 111649 ||| | || || |||||| || | || || | | | ||| || || ||||||| Sbjct 511791 AAATATAATAAATTTAATTAAAAATGATCCTACAAGTAGAAGAATTCTTTTGTGTGCATG 511850 Query 111650 GAACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTA 111709 ||| ||| | | || |||||||| | || || |||||| || | || || ||||| Sbjct 511851 GAATGTAAAAGATCTTGACCAAATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTA 511910 Query 111710 TGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGG 111769 ||| ||| || | | ||||| |||||||| | || |||| | || || || Sbjct 511911 TGTTTTCGATGGAAAATTATCATGTATTATGTATCAAAGGTCATGTGATTTAGGACTAGG 511970 Query 111770 TGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAA 111829 || || ||||||||||| ||| | | ||||| | || || || | || Sbjct 511971 AGTACCTTTTAATATTGCTTCTTATTCTATTTTTACTCATATGATTGCACAAGTCTGTAA 512030 Query 111830 TCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACAT 111889 | | |||| | ||||| || |||||| | ||| ||||||||||||| | || ||||| Sbjct 512031 TTTGCAACCTGCCGAATTTATACACGTTTTAGGAAATGCGCATGTTTATAATAATCACAT 512090 Query 111890 TGAT 111893 ||| Sbjct 512091 CGAT 512094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303339689551406