Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq169 132 4e-26 seq5 125 6e-24 >seq169 Length=6603 Score = 132 bits (146), Expect = 4e-26 Identities = 175/240 (73%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||||||||| |||||| | ||||| |||| || || ||| | Sbjct 5551 ATGCAAATTTTTGTTAAAACATTAACAGGAAAAACCATTACTCTCGATGTTGAA-CCATC 5493 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||| ||| | || ||| ||| ||| || |||||||| || || || || || Sbjct 5492 TGACACCATTGAGAATGTTAAAGCAAAAATTCAAGATAAAGAAGGAATTCCACCTGACCA 5433 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| ||| | || | | ||| || ||| | || || | |||| | ||||| || Sbjct 5432 ACAAAGATTAATATTTGCCGGAAAACAATTAGAGGACGGAAGAACTCTATCAGATTACAA 5373 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAATGATT 24229 |||||||||||||| || | || |||||||||||||| ||||| || | |||| ||| Sbjct 5372 TATTCAAAAAGAATCCACCTTACACTTAGTGTTAAGATTAAGAGGTGGTTTTTAATTATT 5313 Score = 102 bits (112), Expect = 7e-17 Identities = 147/202 (73%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 24018 GGAAAATCGATTACCATCGAAGTCGAGGCCAAC-GACACCATCGAGCAAGTCAAACAAAA 24076 |||||| | || ||| | || |||||| ||| | ||||| || ||| | || || ||| Sbjct 5752 GGAAAAACTATAACCCTTGACGTCGAG-CCATCTGACACTATTGAGAATGTAAAGGCAAA 5694 Query 24077 GATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCA 24136 ||| || |||||||| || || || || ||||| ||| | || | | || || || Sbjct 5693 AATTCAAGATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATTTGCTGGAAAACA 5634 Query 24137 ACTCGAAGATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATT 24195 | | ||||||| |||| | | | | || || ||||||||||| ||||||||| | || | Sbjct 5633 ATTAGAAGATGGAAGAA-CATTATCAGACTACAACATTCAAAAGGAATCTACATTACACT 5575 Query 24196 TAGTGTTAAGATTGAGAGGAGG 24217 ||||||||||| | ||||| || Sbjct 5574 TAGTGTTAAGACTAAGAGGTGG 5553 >seq5 Length=2479031 Score = 125 bits (138), Expect = 6e-24 Identities = 161/217 (74%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 23985 AACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAG 24044 || ||||||||| | ||||| |||||||||||||||||| | |||||| | || || || Sbjct 2307830 AAGAAAATGCAAATTTTTGTTAAAACATTAACTGGAAAAACAATTACCCTTGATGTTGA- 2307772 Query 24045 GCCAAC-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCC 24103 |||| | || || || ||| | || || ||| ||| || |||||||| || || || Sbjct 2307771 GCCATCTGATACGATTGAGAATGTGAAGGCAAAAATTCAAGATAAAGAAGGAATTCCACC 2307712 Query 24104 CGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-G 24162 |||||||| ||| | || | | || || ||| | ||||||| || ||| | | | | Sbjct 2307711 TGATCAACAAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAG-AACATTATCAG 2307653 Query 24163 ATTATAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||||| |||||||| ||||||||| | || || || Sbjct 2307652 ATTATAATATTCAAAAGGAATCTACATTACACTTGGT 2307616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429931635209115