Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq5 120 3e-22 seq169 116 3e-21 >seq5 Length=2479031 Score = 120 bits (132), Expect = 3e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 ||||||||||||||||| ||||| | || |||||||| |||||| | || ||| || Sbjct 2307827 AAAATGCAAATTTTTGTTAAAACATTAACTGGAAAAACAATTACCCTTGATGTTGAG-CC 2307769 Query 115343 AGC-GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 | | || || ||| | || || ||||||| ||||||||||| | || ||| Sbjct 2307768 ATCTGATACGATTGAGAATGTGAAGGCAAAAATTCAAGATAAAGAAGGAATTCCACCTGA 2307709 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 ||| |||||| | || | ||| || |||||||||||||||| | ||| | | ||||| Sbjct 2307708 TCAACAAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGAACATTATCAGATTA 2307649 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGT 115494 ||| |||||||| || ||||| |||| |||| Sbjct 2307648 TAATATTCAAAAGGAATCTACATTACACTTGGT 2307616 >seq169 Length=6603 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| ||||| | || |||||||||||||| |||| || ||| | Sbjct 5551 ATGCAAATTTTTGTTAAAACATTAACAGGAAAAACCATTACTCTCGATGTTGAA-CCATC 5493 Query 115346 -GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| | || ||| ||||||| ||||||||||| | || ||| || Sbjct 5492 TGACACCATTGAGAATGTTAAAGCAAAAATTCAAGATAAAGAAGGAATTCCACCTGACCA 5433 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| | || | ||| || ||||||||||| || | | ||| | | ||||| || Sbjct 5432 ACAAAGATTAATATTTGCCGGAAAACAATTAGAGGACGGAAGAACTCTATCAGATTACAA 5373 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||||||| || || |||| | ||||| ||||| |||| || Sbjct 5372 TATTCAAAAAGAATCCACCTTACACTTAGTGTTAAGATTAAGAGGTGG 5325 Score = 95.1 bits (104), Expect = 1e-14 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 115313 GGAAAAACCATTACCGTCGAAACGGAGTCCAGC-GACACTGTTGGACAAGTAAAACAAAA 115371 |||||||| || ||| | || ||| ||| | |||||| ||| | ||||| ||| Sbjct 5752 GGAAAAACTATAACCCTTGACGTCGAG-CCATCTGACACTATTGAGAATGTAAAGGCAAA 5694 Query 115372 AATTGCCGATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACA 115431 |||| ||||||||||| | || ||| || |||||| | || | ||| || ||||| Sbjct 5693 AATTCAAGATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATTTGCTGGAAAACA 5634 Query 115432 ATTAGAAGATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATAT 115491 ||||||||||| | ||| | | || || ||||||||||| || ||||| |||| | Sbjct 5633 ATTAGAAGATGGAAGAACATTATCAGACTACAACATTCAAAAGGAATCTACATTACACTT 5574 Query 115492 GGTGTTGAGATTGCGAGGAGG 115512 ||||| ||| | |||| || Sbjct 5573 AGTGTTAAGACTAAGAGGTGG 5553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425339681827960