Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq6 385 6e-102 >seq6 Length=2947581 Score = 385 bits (426), Expect = 6e-102 Identities = 1118/1705 (66%), Gaps = 52/1705 (3%) Strand=Plus/Plus Query 61991 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCC 62050 ||||| ||||| ||||||||||||||||| | ||||| ||||||| ||||||| Sbjct 1353392 TGATCAATGAAAATACCCCTGTCTGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 1353451 Query 62051 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGA 62106 || | ||||| || ||||| |||| || ||||| | | || ||| |||| Sbjct 1353452 CATACTGTTTTGTACAACTCCTTTAAG-TCATCTGGTATTTCACTTATATATTGAACACT 1353510 Query 62107 TCCACCATCTGCCAT-AATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 62165 |||| | || || ||| | | || || || |||| |||||| ||| || || Sbjct 1353511 TCCATTGTGAGCTATTAATTGTTGT-TTCATGTCTTCATCCCATAAACCTCTTTCAAATA 1353569 Query 62166 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 62225 || || | | | ||| |||||||| || |||||||||| || ||||| | | | Sbjct 1353570 AATCTTTTAACAAATGGGGATTAACAACGAAAAATTCTCCACTTAAAACTCTTCTATAAT 1353629 Query 62226 AAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 62285 |||||||||| ||||| ||||| | || ||||||||||| | |||||| | ||| |||| Sbjct 1353630 AAATATTACTAGTATATGGTTCAAAGGATTCATTATTTCCAAGAATTTGTGAAGTAGATG 1353689 Query 62286 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTT 62345 |||| ||||||||||| | ||||| ||||| | ||| | | | |||||| ||| Sbjct 1353690 CAGTTGGCATAGGTGCTAATAATAATGAGTTTCTTAAACCATGCTTACGAATTTTAGCTT 1353749 Query 62346 TTAGAGGTTCCCAATTCCAAAGAT-----CCGACGGTACAACNNNNNNNNNNNNNNNTTG 62400 ||| ||||||| |||| | | || | | | ||| Sbjct 1353750 TTAATTCATCCCAATCCCAATATTTGTTATCAAC--TTTAGCATTCCACATATCAAATTG 1353807 Query 62401 TAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAG 62459 || || || | || || | || |||| ||| | || |||||||| | | || Sbjct 1353808 TAATATTCCTTGGCTAGCTGGAC-TTCCTTGATAGGATTCATATGGTCCATGTATAGAAG 1353866 Query 62460 CTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTA 62519 | | |||| | | ||||| ||| | || || || ||||| || || | ||||| | Sbjct 1353867 CCAATTCAACAGACATTTCTAAAGCAGCATAGTACATTGTTTCAAATATTCTTTTATTCA 1353926 Query 62520 GATCTTGCGCTTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAA 62577 |||| || | ||| ||| ||||||| |||| | ||||| | |||||||| Sbjct 1353927 ATTCTTTTGCAGCATCAG--ATTCATATGGATATCTTAATAACATAAATGTATCTGCTAA 1353984 Query 62578 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 62637 |||||| ||||||||||| |||||||| ||||| |||| || ||| || ||| | Sbjct 1353985 TCCTTGTACACCAATACCAATAGGTCTGTGTCTAGTATTGGATGTTTTTGCCTCTTTGAC 1354044 Query 62638 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATC 62697 || |||||||| | ||||||||||||| | ||||||| ||| | ||| | || Sbjct 1354045 TGGGTAATAATTTCTTTCTATAATTTTATCTAAATTTCTGGTAATAATTTTAGTAATTTC 1354104 Query 62698 CTTCAGTTTGAGAAAATCAAATCGCCCATCTATTACAA----ACATGTT----CAATGCA 62749 | | || ||||| |||| | | | || ||| ||| || || || Sbjct 1354105 ATATAACTTTTTAAAATTAAAT--TCTTTTTTTTCCAAATCTACAAATTTACATAAAGCT 1354162 Query 62750 ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 62809 | |||||||| |||||| || || || |||| || | ||||| ||| || ||| Sbjct 1354163 ATAGATGCCAAATTACATACAGCAACTTCATCAGGGGATGTATATTCTATAATTTCACAA 1354222 Query 62810 CAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 62869 || | |||||||| || || || |||||||||| ||||||| || ||||| | | Sbjct 1354223 CATAAGTTACTACATTTAATAGTACCTAAATTTTTTTGATTAGATTTAGCATTACAAGAA 1354282 Query 62870 TCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 62929 || ||||| | || |||| ||| ||||| || || || || || || ||| Sbjct 1354283 TCTTTATATAACATATATGGTACACCTGTTTCTATTTGGCTTTGTAATATAGCAAACCAT 1354342 Query 62930 ACGACTCGAGCCTTTATTATAGATTTGTATC---TCTTTTCTCTTTCGTATAGTGTATAC 62986 | || |||| | | | ||| | || | |||||| ||| ||| ||||| Sbjct 1354343 AAATCTTGAGC---AAGAACTGTTTTTTTTCCCATATTTTCTTCTTCATATTTAGTATAT 1354399 Query 62987 AATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGT----CCAGGACATTCATCCGGACA 63042 ||| ||| || || || ||| ||| | || | || |||||||||| ||||| Sbjct 1354400 AATTTTTCAAATTCTTCACCC----CATGTTTCACTTAAACCTGGACATTCATTTGGACA 1354455 Query 63043 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63102 ||| | | ||| | | | || || |||| |||||||| |||||||||| ||| | Sbjct 1354456 CATTAGGGTCCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATAC 1354515 Query 63103 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63162 ||| ||||| ||||| | ||| ||| || ||||| ||| || | | ||| | Sbjct 1354516 AGCATAAAATAAATCTCGTGCTCTTAATTCTTCTTTTCCATGATTTTTCCTTAAATCTAA 1354575 Query 63163 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63222 || | | ||||| |||||||| ||||| | || | || | | ||| ||||| Sbjct 1354576 AAATTCAAATATATCTGAATGCCATGGTTCAATATAAACAGCAAAAGATCCTTTACGTTT 1354635 Query 63223 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63282 ||| || ||||||| ||||| || |||| |||| ||||||| ||||| || | | Sbjct 1354636 TCCTCCACCTTGATCTACATATCTTGCAGTGTCATTAAAAACTCTTAACATAGGTACTAA 1354695 Query 63283 ACCATTGGATGTACCATTGGTCCCTGAGATAT-AGCTTCCACTGGCACGAATATTACT-- 63339 |||||| ||| | |||||||| ||| |||| || | | | | ||| || Sbjct 1354696 ACCATTAGATATTCCATTGGTACCTCTAATATAAGAAT---TTTGTCCTCTTATGTCTTG 1354752 Query 63340 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 63399 | || || ||| || || ||||| ||||| ||||| || ||| |||||| || || Sbjct 1354753 TACTGCTACACCAATACCTCCTGCAGTTTTACTAATTAAAGCACATTGTTTTAGAGTTTC 1354812 Query 63400 ATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGT 63458 | | || || || ||| ||| | |||| | ||| || ||||| ||||||||| Sbjct 1354813 AAAAATACCTTCAATAGAATCTGCTTTCATCGATAA-TAAGAAACAAGAAGACATTTGTG 1354871 Query 63459 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAA 63518 | | || || | ||||||||| ||||||| || || || || |||| | ||| | Sbjct 1354872 GTCTGGGCGTCCCTGAATTAAATAATGTAGGAGTTGCATGGGTGAAATATTTCTGAGACA 1354931 Query 63519 GTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACAC 63578 || || || || || | |||| |||||||| | ||| || || | | || | Sbjct 1354932 TTAAATGATATGTTTCTAGAGCTTTATCTATATCATCTATATGTATACCAATAGAAACTC 1354991 Query 63579 GCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATT 63638 |||||| | || ||||||||||||| || || || || || || || || ||| Sbjct 1354992 TCATTAATAAATGTTGAGGTCTTTCAATAATTTTATTATTAATACGTAATAAATAAGATC 1355051 Query 63639 TTTCCAAAGTTTTAAAACCAAAATA 63663 ||||||| |||||||| |||||||| Sbjct 1355052 TTTCCAAGGTTTTAAATCCAAAATA 1355076 Score = 179 bits (198), Expect = 5e-40 Identities = 583/891 (65%), Gaps = 22/891 (2%) Strand=Plus/Plus Query 32351 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTT 32410 ||| | ||| ||||| |||||| || || | || | ||| |||||||| || ||||| Sbjct 127771 TTGGGCCATGACTCCTGATTTTTGATAATCTGCGACCCTTTTCTCGAAAAAGTTTGTTTT 127830 Query 32411 ACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAttttttt 32470 |||| | ||| || ||||| ||| ||||||||| | || ||||||| Sbjct 127831 TCCTTGAAGTGAAATTAAGTCCATCCAATTGAATGGATTTTTTGAATGGAAAATTTTAGA 127890 Query 32471 AAATCCCAA---TTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCAT 32527 |||| || ||| ||| ||||||||||| ||||||||||||||| ||| | Sbjct 127891 GCATCCTAAACATTCT--AAT-AATCTATCTGCAACAAATTCTATATATTGAGACATAAG 127947 Query 32528 TTCACAATTCATTCCTATAAGTTTAACTGGAA--GAGCCACAGTAAGAAATTCTTGTTCA 32585 | | ||||||| ||||| | | | ||| | || |||| | || |||| ||| Sbjct 127948 TCTAGAATTCATACCTATTAAATCACATGGTAATGATTCACATATAAAAGATCTT--TCA 128005 Query 32586 ATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATAC---AAT 32642 | || || ||| | | |||| | ||| ||| ||| || || ||| Sbjct 128006 ACTTCTACAGCTTCTTTAACAATATTTTGTACCATTTGTTCTGGAAGTTTATTATCTAAT 128065 Query 32643 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAAT 32702 ||| || | || || || ||||| ||||| || || |||||||| |||||| Sbjct 128066 AAAC---TATAAATTAAGCAATTAAAATCTGTATGTAGTCCTTCATCTCTACTTATTAAT 128122 Query 32703 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 32762 || || ||| || | || | | | | ||||||| |||||| || | | || Sbjct 128123 TCATTACTAAATGTTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAAAATAG-CACA 128181 Query 32763 AATGAT-CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA 32821 || | | ||| || || |||||||| || ||| || | | || || || | Sbjct 128182 AAAGCTACCACTGAATAATATTCCTTCAACACATGCATTAGCTACTATCCTTTCAGCAAA 128241 Query 32822 ACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 32881 | |||| ||||| ||| ||||| || || |||||||| ||| || Sbjct 128242 TGAATTAGTATCATTAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACTGCAGGGAT 128301 Query 32882 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAAT 32941 | |||||||||| ||| | || | |||| || |||||||| ||| ||||||| Sbjct 128302 ATTTTCTATAGCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAAT 128361 Query 32942 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCA 33001 || | |||||| |||| |||||||| ||||| | || |||||||| || || Sbjct 128362 TAATAAACTATATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTT 128421 Query 33002 TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT-GCTAAATTTTCATTCACTA 33060 | | || || || || || || ||| | ||||| | || || ||||| || |||| Sbjct 128422 TTTTGCTTCTGTTATTTGAACCTCTCTTAAAAATT-TACTAGCCAAATTCTCTAATACTA 128480 Query 33061 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTG 33120 | || ||||| ||||||||||| || || ||||| |||||||||| ||| || | || Sbjct 128481 TACCATCACTTGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCAT-TGTCA 128539 Query 33121 TT-AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 33179 || | ||| | |||| || | ||| |||||| ||| | |||||| ||||||||||| Sbjct 128540 TTCAATTTCTCAAAATCTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAAT 128599 Query 33180 GATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGA 33230 || || || || || || || | || ||| | ||| ||||| |||||| Sbjct 128600 GAAGCTTCAGCTTTCTTGTAAAAATCCCAAACTTCAGGATATAATATTGGA 128650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633625402306800