Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq169 165 7e-36 seq5 122 8e-23 >seq169 Length=6603 Score = 165 bits (182), Expect = 7e-36 Identities = 190/251 (76%), Gaps = 11/251 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || || || || ||| |||| || |||| || || | ||| Sbjct 5551 ATGCAAATTTTTGTTAAAACATTAACAGGAAAAACCATTACTCTCGATGTTGAACCATCT 5492 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || ||| | || ||||||||| ||| || |||||||| |||||||||||| Sbjct 5491 GACACCATTGAG--AATGTTAAAGCAAAAATTCAA-GATAAAGAAGGAATTCCACCTGAC 5435 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | || |||||||| ||||||||||| || | | ||| | |||||| Sbjct 5434 CAACAAAGATTAATATTTGCCGGAAAACAATTAGAGGACGGAAGAACTCTATCAGATTAC 5375 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG----AAATTA 25231 |||||||||||||||||||| |||| |||||| |||| ||||||| || ||||| Sbjct 5374 AATATTCAAAAAGAATCCACCTTACACTTAGTGTTAAGATTAAGAGGTGGTTTTTAATTA 5315 Query 25232 TTATACTATTA 25242 || || ||||| Sbjct 5314 TT-TATTATTA 5305 Score = 125 bits (138), Expect = 6e-24 Identities = 150/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 25026 GGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAG-CAAAA 25084 || ||| | || || | || || ||| | ||||||||||| ||| | ||| ||||| Sbjct 5752 GGAAAAACTATAACCCTTGACGTCGAGCCATCTGACACTATTGAGAATGTAAAGGCAAAA 5693 Query 25085 AATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACA 25144 | ||| || |||||||| ||||||||||||||||| | | || ||||| || ||||| Sbjct 5692 ATTCAA-GATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATTTGCTGGAAAACA 5634 Query 25145 ATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTT 25204 ||||||||||| | || | || ||||| |||||||| ||||| || |||| || Sbjct 5633 ATTAGAAGATGGAAGAACATTATCAGACTACAACATTCAAAAGGAATCTACATTACACTT 5574 Query 25205 AGTGCTAAGGCTAAGAGGAGG 25225 |||| |||| |||||||| || Sbjct 5573 AGTGTTAAGACTAAGAGGTGG 5553 >seq5 Length=2479031 Score = 122 bits (134), Expect = 8e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || || || || || ||| | || || | || || ||| | || Sbjct 2307825 AATGCAAATTTTTGTTAAAACATTAACTGGAAAAACAATTACCCTTGATGTTGAGCCATC 2307766 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| || || ||| ||||| |||||| ||| || |||||||| ||||||||||| | Sbjct 2307765 TGATACGATTGAGAATGTGAAGGCAAAAATTCAA-GATAAAGAAGGAATTCCACCTGATC 2307707 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| | | || ||||| || |||||||||||||||| | || | ||||| | Sbjct 2307706 AACAAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGAACATTATCAGATTATA 2307647 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGT 25207 |||||||||| ||||| || |||| || || Sbjct 2307646 ATATTCAAAAGGAATCTACATTACACTTGGT 2307616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433323600772895