Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq6 194 2e-44 >seq6 Length=2947581 Score = 194 bits (214), Expect = 2e-44 Identities = 514/772 (67%), Gaps = 21/772 (3%) Strand=Plus/Plus Query 92918 AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATC-ACAATTCATTCCTAG 92976 ||||||||||| || ||||||||||| || |||||||| || || | ||||||| |||| Sbjct 127907 AATAATCTATCTGCAACAAATTCTATATATTGAGACAT-AAGTCTAGAATTCATACCTAT 127965 Query 92977 AAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCA 93035 | | ||| |||| | || | ||| | | || | | | || |||||||| | Sbjct 127966 TAAATC-ACATGGTAATGATTCACATATAAAAGATCTTTCAACTTCTACAGCTTCTTTAA 128024 Query 93036 AGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACG 93095 || | | ||| | | ||| |||| | | | || | || |||||||| Sbjct 128025 CAATATTTTGTACCATTTGTTCTGGAAGTTTATTATCTAATAAACTATAAATTAAGCAAT 128084 Query 93096 CAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTG 93155 ||| || ||||||| ||||| |||| ||| || ||||| || ||||||||||| Sbjct 128085 TAAAATCTGTATGTAGTCCTTCATCTCTACTTATTAATTCATTACTAAATGTTAAACCAT 128144 Query 93156 GTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215 |||| | |||| || | |||||| || | | ||| |||||| || ||||| | Sbjct 128145 GTAATTTATTTTGTTTTTTAAACCAAAAAATAGCACAAAAGCTACCACTGAATAATATTC 128204 Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGC---TGA 93272 |||| || |||| || || || | ||| ||||| |||||| | | | Sbjct 128205 CTTCAACACATGCATTAGCTACTATCCTTTCAGCAAAT------GAATTAGTATCATTAA 128258 Query 93273 TCCATTTTAAAGCCCAATCGGCTTT-TTTCTTAATACAAGGTAGTGTTTCGATAGCGTTA 93331 |||||||| ||||| ||||| ||| ||| | || || | |||| ||||| | | Sbjct 128259 TCCATTTTGCTGCCCATAATGCTTTATTTTTTACTGCAGGGATAT-TTTCTATAGCATGA 128317 Query 93332 AATAGGT--AATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACA 93389 |||| | ||||| || | | |||| || || |||| ||||| | | ||| Sbjct 128318 AATAAATTTAATCTTTCTTTTTC--ATCTTTAATATAATTATCAATTAATAAACTATATG 128375 Query 93390 TTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGA 93449 |||| ||||| | ||| || | || ||||| || || || | | ||||| || | Sbjct 128376 TTTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCTGTTA 128435 Query 93450 TCTGCACTTCTTGAGAAAATCTCTCTA-CGAGATTTTCATTGACTATACCATCGGATGCT 93508 | || || ||| ||||| | ||| | | ||| || ||||||||||| |||| Sbjct 128436 TTTGAACCTCTCTTAAAAATTTA-CTAGCCAAATTCTCTAATACTATACCATCACTTGCT 128494 Query 93509 GCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAA 93568 |||||||| || || | ||||||||||||||||||||||| || || | || || || Sbjct 128495 GCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTGTCATTCAATTTCTCAAAA 128554 Query 93569 TCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTT 93628 || || ||| | || | ||| | |||||| | |||||||| || ||||| ||||| Sbjct 128555 TCTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATGAAGCTTCAGCTTTC 128614 Query 93629 TTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGAT 93680 ||||| | |||||| | || ||||| |||||| ||| |||||||| Sbjct 128615 TTGTAAAAATCCCAAACTTCAGGATATAATATTGGATATAAAGTAAAACGAT 128666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556855001686920