Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq169 176 4e-39 seq5 134 1e-26 seq6 84.2 2e-11 >seq169 Length=6603 Score = 176 bits (194), Expect = 4e-39 Identities = 190/251 (76%), Gaps = 2/251 (1%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||||||||| ||||| || ||||| | ||||| || || ||| | | Sbjct 5551 ATGCAAATTTTTGTTAAAACATTAACAGGAAAAACCATTACTCTCGATGTTGAACCATCT 5492 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | ||| |||||||||||| || || || |||||||| || ||| Sbjct 5491 GACACCATTGAGAATGTTAAAGCAAAAATTCAAGATAAAGAAGGAATTCCACCTGACCAA 5432 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | ||||||||||| ||||| |||||||| | || | || |||||||| Sbjct 5431 CAAAGATTAATATTTGCCGGAAAACAATTAGAGGACGGAAGAACTCTATCAGATTACAAT 5372 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTTCCAT--TTT 22456 |||||||||||||||||| |||| ||||| || |||| | || |||||| || ||| Sbjct 5371 ATTCAAAAAGAATCCACCTTACACTTAGTGTTAAGATTAAGAGGTGGTTTTTAATTATTT 5312 Query 22457 AAAATTATATT 22467 | ||||| || Sbjct 5311 ATTATTATTTT 5301 Score = 98.7 bits (108), Expect = 8e-16 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 22302 AAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAA 22361 |||||||||||| || || || |||||||| || |||||| | | |||||||| || || Sbjct 5696 AAAAATTCAAGATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATTTGCTGGAAA 5637 Query 22362 ACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACA 22421 ||| ||||| ||| | || | || || |||||||||||||| ||||| || |||| Sbjct 5636 ACAATTAGAAGATGGAAGAACATTATCAGACTACAACATTCAAAAGGAATCTACATTACA 5577 Query 22422 TTTAGTTTT 22430 ||||| || Sbjct 5576 CTTAGTGTT 5568 >seq5 Length=2479031 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || |||||||||||||||||||| ||||| || ||||| | || ||||| || || | Sbjct 2307827 AAAATGCAAATTTTTGTTAAAACATTAACTGGAAAAACAATTACCCTTGATGTTGAGCCA 2307768 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || | || |||||||||||| || || || |||||||| ||| Sbjct 2307767 TCTGATACGATTGAGAATGTGAAGGCAAAAATTCAAGATAAAGAAGGAATTCCACCTGAT 2307708 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 |||||| | | |||||||| || ||||| ||||| ||| | || | || ||||| Sbjct 2307707 CAACAAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGAACATTATCAGATTAT 2307648 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGT 22427 || |||||||| ||||| || |||| || || Sbjct 2307647 AATATTCAAAAGGAATCTACATTACACTTGGT 2307616 >seq6 Length=2947581 Score = 84.2 bits (92), Expect = 2e-11 Identities = 229/351 (65%), Gaps = 0/351 (0%) Strand=Plus/Plus Query 129504 AAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTTTCTATTGGATTT 129563 |||||| || || || ||||| | ||| | ||| || |||| ||| | |||||||| | Sbjct 1353970 AAATGTATCTGCTAATCCTTGTACACCAATACCAATAGGTCTGTGTCTAGTATTGGATGT 1354029 Query 129564 TTGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTTAAATTCTTGACCAC 129623 || |||| | || || || || | ||||||||||| | |||||| || | Sbjct 1354030 TTTTGCCTCTTTGACTGGGTAATAATTTCTTTCTATAATTTTATCTAAATTTCTGGTAAT 1354089 Query 129624 AATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCTACATCGATGTCGACAAA 129683 |||||| || | | | |||| ||| |||||| | || | || | || ||||| Sbjct 1354090 AATTTTAGTAATTTCATATAACTTTTTAAAATTAAATTCTTTTTTTTCCAAATCTACAAA 1354149 Query 129684 TTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTC 129743 || | | | || || |||||||| || || ||| ||| | | | || || Sbjct 1354150 TTTACATAAAGCTATAGATGCCAAATTACATACAGCAACTTCATCAGGGGATGTATATTC 1354209 Query 129744 GACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTT 129803 | |||||| || || |||||| |||||| || || |||| ||||||||| ||| Sbjct 1354210 TATAATTTCACAACATAAGTTACTACATTTAATAGTACCTAAATTTTTTTGATTAGATTT 1354269 Query 129804 CATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTG 129854 || |||| |||||| || | ||| || || || ||||| | ||| Sbjct 1354270 AGCATTACAAGAATCTTTATATAACATATATGGTACACCTGTTTCTATTTG 1354320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419723738842645