Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq169 158 2e-33 seq5 150 3e-31 >seq169 Length=6603 Score = 158 bits (174), Expect = 2e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 || || ||||||| ||||| |||||||| || || ||||| || || || || || || Sbjct 5340 AACACTAAGTGTAAGGTGGATTCTTTTTGAATATTGTAATCTGATAGAGTTCTTCCGTCC 5399 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 ||||| || || ||||| ||||| | |||||||||||| |||||||| ||||| || ||| Sbjct 5400 TCTAATTGTTTTCCGGCAAATATTAATCTTTGTTGGTCAGGTGGAATTCCTTCTTTATCT 5459 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 ||||| ||||| || || ||| |||||||| | || ||| || || | || |||||| Sbjct 5460 TGAATTTTTGCTTTAACATTCTCAATGGTGTCAGATGGTTCAACATCGAGAGTAATGGTT 5519 Query 68430 TTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || | || || || || || ||||| Sbjct 5520 TTTCCTGTTAATGTTTTAACAAAAATTTGCAT 5551 Score = 140 bits (154), Expect = 6e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 || || ||||||| || || || ||||| ||||| || || || | ||| || |||||| Sbjct 5568 AACACTAAGTGTAATGTAGATTCCTTTTGAATGTTGTAGTCTGATAATGTTCTTCCATCT 5627 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 ||||| || || || || ||||| | |||||||||||| |||||||| ||||| || ||| Sbjct 5628 TCTAATTGTTTTCCAGCAAATATTAATCTTTGTTGGTCAGGTGGAATTCCTTCTTTATCT 5687 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 ||||| |||||||| || ||| || ||||| | || || || || | ||| || ||| Sbjct 5688 TGAATTTTTGCCTTTACATTCTCAATAGTGTCAGATGGCTCGACGTCAAGGGTTATAGTT 5747 Query 68430 TTTCC 68434 ||||| Sbjct 5748 TTTCC 5752 >seq5 Length=2479031 Score = 150 bits (166), Expect = 3e-31 Identities = 160/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 68252 TACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTC 68311 ||||||||||| || || || ||||| || |||||||| || | ||| || |||||||| Sbjct 2307615 TACCAAGTGTAATGTAGATTCCTTTTGAATATTATAATCTGATAATGTTCTTCCATCTTC 2307674 Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 ||| || || || || ||||| | ||||||||| || |||||||| ||||| || ||||| Sbjct 2307675 TAATTGTTTTCCAGCAAATATTAATCTTTGTTGATCAGGTGGAATTCCTTCTTTATCTTG 2307734 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 ||| |||||||| || ||| || || || | || || || || | ||| || ||||| Sbjct 2307735 AATTTTTGCCTTCACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATTGTTTT 2307794 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||| || | || || || || || |||||| Sbjct 2307795 TCCAGTTAATGTTTTAACAAAAATTTGCATT 2307825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921612803606760