Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq5 116 3e-21 seq169 111 1e-19 >seq5 Length=2479031 Score = 116 bits (128), Expect = 3e-21 Identities = 156/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 ||||||||||| ||| ||||||||||||| || ||||| |||||| | || || | Sbjct 2307827 AAAATGCAAATTTTTGTTAAAACATTAACTGGAAAAACAATTACCCTTGATGTTGAGCCA 2307768 Query 21891 GCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTA 21947 | || ||| | | || | ||| ||||||| |||||||| || | ||||| Sbjct 2307767 TCTGATACGATTGAGAATGTGAAGGCAAAAATTCAAGATAAAGAAGGAATTCCACCTG-- 2307710 Query 21948 AACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGAT 22007 | ||||| ||| | || |||||||| |||||| |||||||| || ||| | | ||| Sbjct 2307709 -ATCAACAAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGAACATTATCAGAT 2307651 Query 22008 TACAATATTCAGAAGGAATCTACTCTTCATATGGTA 22043 || |||||||| ||||||||||| | || ||||| Sbjct 2307650 TATAATATTCAAAAGGAATCTACATTACACTTGGTA 2307615 >seq169 Length=6603 Score = 111 bits (122), Expect = 1e-19 Identities = 170/241 (71%), Gaps = 6/241 (2%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| ||||||||||||| || ||||||||||| | || ||| | | Sbjct 5551 ATGCAAATTTTTGTTAAAACATTAACAGGAAAAACCATTACTCTCGATGTTGAACCATCT 5492 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || || | | || |||| ||||||| |||||||| || | ||||| || Sbjct 5491 GACACCATTGAGAATGTTAAAGCAAAAATTCAAGATAAAGAAGGAATTCCACCTG---AC 5435 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| ||| | || ||||| || |||||| |||| || || |||| | | |||||| Sbjct 5434 CAACAAAGATTAATATTTGCCGGAAAACAATTAGAGGACGGAAGAACTCTATCAGATTAC 5375 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAATAA 22070 |||||||| || ||||| || | || | || ||| | ||| |||| || | ||||| | Sbjct 5374 AATATTCAAAAAGAATCCACCTTACACTTAGTGTTAAGATTAAGAGGTGGTTTTTAATTA 5315 Query 22071 T 22071 | Sbjct 5314 T 5314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358121164249882