Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq169 98.7 2e-15 seq5 98.7 2e-15 >seq169 Length=6603 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| ||||| || || | || || | |||||| |||||||||||||| || || Sbjct 5360 TTCTTTTTGAATATTGTAATCTGATAGAGTTCTTCCGTCCTCTAATTGTTTTCCGGCAAA 5419 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | ||||| | ||| |||||||||||||| || ||||| ||||| || || Sbjct 5420 TATTAATCTTTGTTGGTCAGGTGGAATTCCTTCTTTATCTTGAATTTTTGCTTTAACATT 5479 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || | ||| || ||||| || || || || || || | || || || Sbjct 5480 CTCAATGGTGTCAGATGGTTCAACATCGAGAGTAATGGTTTTTCCTGTTAATGTTTTAAC 5539 Query 288462 GAATATCTGCAT 288473 || || ||||| Sbjct 5540 AAAAATTTGCAT 5551 >seq5 Length=2479031 Score = 98.7 bits (108), Expect = 2e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| |||||||| || | | || | ||| ||||||||||||||||| || || Sbjct 2307633 TTCCTTTTGAATATTATAATCTGATAATGTTCTTCCATCTTCTAATTGTTTTCCAGCAAA 2307692 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | |||||| | ||| |||||||||||||| || ||||| || ||||| || Sbjct 2307693 TATTAATCTTTGTTGATCAGGTGGAATTCCTTCTTTATCTTGAATTTTTGCCTTCACATT 2307752 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||| | || || || || || || || || || || | || || || Sbjct 2307753 CTCAATCGTATCAGATGGCTCAACATCAAGGGTAATTGTTTTTCCAGTTAATGTTTTAAC 2307812 Query 288462 GAATATCTGCATTATGTTATTCTAATA 288488 || || |||||| | ||| ||||| Sbjct 2307813 AAAAATTTGCATTTTCTTAAAATAATA 2307839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179641809769774