Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq169 113 5e-20 seq5 91.5 1e-13 >seq169 Length=6603 Score = 113 bits (124), Expect = 5e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | ||||| || | || |||||||||||||| |||||||||| | || | Sbjct 5334 AATCTTAACACTAAGTGTAAGGTGGATTCTTTTTGAATATTGTAATCTGATAGAGTTCTT 5393 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 |||| || | || || |||||| | || | | || ||||| || |||||||||||| Sbjct 5394 CCGTCCTCTAATTGTTTTCCGGCAAATATTAATCTTTGTTGGTCAGGTGGAATTCCTTCT 5453 Query 64346 TTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGT 64404 || ||||| | |||||||||| ||| ||| | || ||| | || || || | ||| Sbjct 5454 TTATCTTG-AATTTTTGCTTTAACATTCTCAATGGTGTCAGATGGTTCAACATCGAGAGT 5512 Query 64405 TACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | ||| || || || || ||||| || ||||||||||| Sbjct 5513 AATGGTTTTTCCTGTTAATGTTTTAACAAAAATTTGCAT 5551 >seq5 Length=2479031 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| |||||||| || ||||||| | || | | ||||| | || || || Sbjct 2307628 GTAGATTCCTTTTGAATATTATAATCTGATAATGTTCTTCCATCTTCTAATTGTTTTCCA 2307687 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | | || || || || |||||||||||||| ||||| |||||| ||| Sbjct 2307688 GCAAATATTAATCTTTGTTGATCAGGTGGAATTCCTTCTTTATCTTGAATTTTTGCCTTC 2307747 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | |||||| | || || || | || | || || || || || ||| Sbjct 2307748 ACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATTGTTTTTCCAGTTAATGTT 2307807 Query 64427 TTTACGAAAATTTGCATTTT 64446 || || |||||||||||||| Sbjct 2307808 TTAACAAAAATTTGCATTTT 2307827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499639597448520