Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq169 145 5e-30 seq5 104 2e-17 >seq169 Length=6603 Score = 145 bits (160), Expect = 5e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||||| ||||| || | ||| || |||||||| || |||||||| Sbjct 5325 CCACCTCTTAATCTTAACACTAAGTGTAAGGTGGATTCTTTTTGAATATTGTAATCTGAT 5384 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| |||| ||||||||||| || || |||| || | |||||||| |||| Sbjct 5385 AGAGTTCTTCCGTCCTCTAATTGTTTTCCGGCAAATATTAATCTTTGTTGGTCAGGTGGA 5444 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| || || |||||| ||| ||| | || || || || ||| || Sbjct 5445 ATTCCTTCTTTATCTTGAATTTTTGCTTTAACATTCTCAATGGTGTCAGATGGTTCAACA 5504 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||||||||||| ||||| | ||||| ||||||||||||||| Sbjct 5505 TCGAGAGTAATGGTTTTTCCTGTTAATGTTTTAACAAAAATTTGCATA 5552 Score = 109 bits (120), Expect = 4e-19 Identities = 147/203 (72%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | |||||| ||||| || | ||||| || ||||| |||||||| || || Sbjct 5553 CCACCTCTTAGTCTTAACACTAAGTGTAATGTAGATTCCTTTTGAATGTTGTAGTC--TG 5610 Query 15010 AGAAT--TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| ||| | |||||||||||||| ||||| |||| || | |||||||| || Sbjct 5611 ATAATGTTCTTCCATCTTCTAATTGTTTTCCAGCAAATATTAATCTTTGTTGGTCAGGTG 5670 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||||||||| || || |||||| |||||| | || ||||| || || | Sbjct 5671 GAATTCCTTCTTTATCTTGAATTTTTGCCTTTACATTCTCAATAGTGTCAGATGGCTCGA 5730 Query 15128 CGTCTAAGGTAATGGTTTTACCT 15150 |||| | ||| || ||||| ||| Sbjct 5731 CGTCAAGGGTTATAGTTTTTCCT 5753 >seq5 Length=2479031 Score = 104 bits (114), Expect = 2e-17 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 14980 GTAGAATCTTTTTGTATGTTGTAATCGCTGAGAAT--TCTCGCGTCTTCTAATTGTTTGC 15037 ||||| || ||||| || || ||||| ||| ||| ||| | |||||||||||||| | Sbjct 2307628 GTAGATTCCTTTTGAATATTATAATC--TGATAATGTTCTTCCATCTTCTAATTGTTTTC 2307685 Query 15038 CAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTT 15097 |||| |||| || | ||||| || |||||||||||| || || |||||| | Sbjct 2307686 CAGCAAATATTAATCTTTGTTGATCAGGTGGAATTCCTTCTTTATCTTGAATTTTTGCCT 2307745 Query 15098 TTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAG 15157 | ||| | || || ||||| || || || | |||||| ||||| || || | | Sbjct 2307746 TCACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATTGTTTTTCCAGTTAATG 2307805 Query 15158 TTTTTACAAAAATTTGCATAT--TTGAAATAA 15187 |||| |||||||||||||| | || |||||| Sbjct 2307806 TTTTAACAAAAATTTGCATTTTCTTAAAATAA 2307837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357388371689405