Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq169 140 3e-28 seq5 125 6e-24 >seq169 Length=6603 Score = 140 bits (154), Expect = 3e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || ||||||| || | || ||||| ||||| ||||| ||||| | ||| | Sbjct 5337 CTTAACACTAAGTGTAAGGTGGATTCTTTTTGAATATTGTAATCTGATAGAGTTCTTCCG 5396 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || ||||||||||| || |||| |||| ||| ||||| || ||||| ||||||||| Sbjct 5397 TCCTCTAATTGTTTTCCGGCAAATATTAATCTTTGTTGGTCAGGTGGAATTCCTTCTTTA 5456 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||||||||||| ||| | || | |||||| || | || || |||||||||| Sbjct 5457 TCTTGAATTTTTGCTTTAACATTCTCAATGGTGTCAGATGGTTCAACATCGAGAGTAATG 5516 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || |||| ||||| |||||||||||||| Sbjct 5517 GTTTTTCCTGTTAATGTTTTAACAAAAATTTGCAT 5551 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45123 AGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTA 45182 || || ||||||| || | || ||||||||||| || || || || | ||| | Sbjct 5562 AGTCTTAACACTAAGTGTAATGTAGATTCCTTTTGAATGTTGTAGTCTGATAATGTTCTT 5621 Query 45183 GAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCT 45242 ||| || ||||||||||| || |||| |||| ||| ||||| || ||||| |||||| Sbjct 5622 CCATCTTCTAATTGTTTTCCAGCAAATATTAATCTTTGTTGGTCAGGTGGAATTCCTTCT 5681 Query 45243 TTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTA 45302 ||||||||||||||| || | || | ||||| || | |||||| || || || Sbjct 5682 TTATCTTGAATTTTTGCCTTTACATTCTCAATAGTGTCAGATGGCTCGACGTCAAGGGTT 5741 Query 45303 ACCGTTTTGCC 45313 | ||||| || Sbjct 5742 ATAGTTTTTCC 5752 >seq5 Length=2479031 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 45144 GTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCT 45203 || ||||||||||| ||||||||||| | ||| | ||| || ||||||||||| Sbjct 2307628 GTAGATTCCTTTTGAATATTATAATCTGATAATGTTCTTCCATCTTCTAATTGTTTTCCA 2307687 Query 45204 GCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTG 45263 || |||| |||| ||| || || || ||||| ||||||||||||||||||||| || Sbjct 2307688 GCAAATATTAATCTTTGTTGATCAGGTGGAATTCCTTCTTTATCTTGAATTTTTGCCTTC 2307747 Query 45264 ATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTT 45323 | || | || || || | ||| || || || |||| ||||| || |||| ||| Sbjct 2307748 ACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATTGTTTTTCCAGTTAATGTT 2307807 Query 45324 TTTACAAAAATTTGCAT 45340 || |||||||||||||| Sbjct 2307808 TTAACAAAAATTTGCAT 2307824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451998493516680