Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq6 170 2e-37 >seq6 Length=2947581 Score = 170 bits (188), Expect = 2e-37 Identities = 970/1540 (63%), Gaps = 34/1540 (2%) Strand=Plus/Minus Query 111705 TTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGT 111764 |||| ||| ||||| || || | || || | || || || ||||| |||||||| | Sbjct 1354917 TTCACCCATGCAACTCCTACATTATTTAATTCAGGGACGCCCAGACCACAAATGTCTTCT 1354858 Query 111765 TGTTTCCTTATTG-CAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGA 111823 |||||| ||||| | | || | ||||| || | || |||| | ||||| | | Sbjct 1354857 TGTTTC-TTATTATCGATGAAAGCAGATTCTATTGAAGGTATTTTTGAAACTCTAAAACA 1354799 Query 111824 ATGTGCCCAAATC--TCAAAGTGGGCTGGTGGTATCGGGAT-GCACATCCATGATGTCAG 111880 |||||| ||| | ||| || | || ||||| || | ||| | || || | || Sbjct 1354798 ATGTGCTTTAATTAGTAAAACTG--CAGGAGGTATTGGTGTAGCAG-TACAAGACATAAG 1354742 Query 111881 AGCCAACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCT 111940 || | || ||| |||||||||||| ||||| ||| ||||| | | || ||| | Sbjct 1354741 AGGACAAAATTCTTATATTAGAGGTACCAATGGAATATCTAATGGTTTAGTACCTATGTT 1354682 Query 111941 TCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATC 111997 | || ||||| | ||| || | |||||| | |||| ||| | || || ||||| Sbjct 1354681 AAGAGTTTTTAATGACACTGCAAGATATGTAGATCAAGGTGGAGGAAAACGTAAAGGATC 1354622 Query 111998 TATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCT 112057 | | || || ||| |||| |||||||| | ||||| | || || | || || | Sbjct 1354621 TTTTGCTGTTTATATTGAACCATGGCATTCAGATATATTTGAATTTTTAGATTTAAGGAA 1354562 Query 112058 CAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGA 112117 || || || | || || | || ||| | || | ||| | ||| |||| || Sbjct 1354561 AAATCATGGAAAAGAAGAATTAAGAGCACGAGATTTATTTTATGCTGTATGGGTTCCTGA 1354502 Query 112118 TCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGC 112177 ||| || |||||||||||| | || | | |||||| | || | |||||| | | Sbjct 1354501 TCTTTTTATGAAGAGAGTTAAAGAAAATAAAAATTGGACCCTAATGTGTCCAAATGAATG 1354442 Query 112178 ACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGA 112237 || ||| | || | |||||| || |||||| | || || || || || || Sbjct 1354441 TCCAGGTTTAAGTGAAACATGGGGTGAAGAATTTGAAAAATTATATACTAAATATGAAGA 1354382 Query 112238 AGAAAGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCT-CAAGT 112296 ||||| | || | || || | ||| ||| | ||| ||||| | ||| Sbjct 1354381 AGAAAATATGGGAAAAAAAACAGTTCTTGCTCAAGATTTATGGTTTGCTATATTACAAAG 1354322 Query 112297 CTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTA 112356 | |||| || || ||| |||||||||| | || ||||| | ||||| || || Sbjct 1354321 C-CAAATAGAAACAGGTGTACCATATATGTTATATAAAGATTCTTGTAATGCTAAATCTA 1354263 Query 112357 ATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTA 112416 ||||||| ||||| ||| || || || ||| | ||| ||||| | |||| || Sbjct 1354262 ATCAAAAAAATTTAGGTACTATTAAATGTAGTAACTTATGTTGTGAAATTATAGAATATA 1354203 Query 112417 CAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGG 112476 || | ||||| ||||| ||||| | ||||| || ||| | || | ||| | Sbjct 1354202 CATCCCCTGATGAAGTTGCTGTATGTAATTTGGCATCTATAGCTTTATGTAAATTTGTAG 1354143 Query 112477 ATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAA 112536 || || | ||| |||| ||| | |||| | | ||| |||| |||| | | || | Sbjct 1354142 ATTTGGAAAAAAAAGAATTTAATTTTAAAAAGTTATATGAAATTACTAAAATTATTACCA 1354083 Query 112537 AAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTA 112596 ||| || | | | |||| || ||||||| |||||| || | || | ||| | Sbjct 1354082 GAAATTTAGATAAAATTATAGAAAGAAATTATTACCCAGTCAAAGAGGCAAAAACATCCA 1354023 Query 112597 ATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTT 112656 ||| |||||| | || |||||| | ||||| ||||| | || ||| ||| || | | Sbjct 1354022 ATACTAGACACAGACCTATTGGTATTGGTGTACAAGGATTAGCAGATACATTTATGTTAT 1353963 Query 112657 GTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAA 112716 | | ||| ||| || || | || || ||| | ||| | |||||||| |||| Sbjct 1353962 TAAGATATCCATATGAATCTGATGCTGCAAAAGAATTGAATAAAAGAATATTTGAAACAA 1353903 Query 112717 TGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAA 112776 |||| | || ||| | || | | || ||||| | |||| ||||||||| Sbjct 1353902 TGTACTATGCTGCTTTAGAAATGTCTGTTGAATTGGCTTCTATACATGGACCATATGAAT 1353843 Query 112777 CCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGG------GAAG 112830 ||| | | || ||||||| ||||| | | ||||||||||||||| ||| Sbjct 1353842 CCTATCAAGGAAGTCCAGCTAGCCAAGGAATATTACAATTTGATATGTGGAATGCTAAAG 1353783 Query 112831 GTGAGACCAAGCTTCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTC 112890 ||| | ||| | | || ||||| | | || | || || | ||| Sbjct 1353782 TTGATAACAA---ATATTGGGATTGGGATGAATTAAAAGCTAAAATTCGTAAGCATGGTT 1353726 Query 112891 TTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTA 112950 | | ||| | || | ||||| |||||||| || || || ||||||| | || | Sbjct 1353725 TAAGAAACTCATTATTATTAGCACCTATGCCAACTGCATCTACTTCACAAATTCTTGGAA 1353666 Query 112951 ATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAG 113010 ||||||||| ||||||||| || || | || || ||| |||||| | |||| Sbjct 1353665 ATAATGAATCCTTTGAACCATATACTAGTAATATTTATTATAGAAGAGTTTTAAGTGGAG 1353606 Query 113011 AGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCA 113070 | ||| | |||| || ||| | | | || | || | ||| | ||| Sbjct 1353605 AATTTTTCGTTGTTAATCCCCATTTGTTAAAAGATTTATTTGAAAGAGGTTTATGGGATG 1353546 Query 113071 AGGATATGAAGGATC---TCAT-GGTGAAAGCGG--GTGGTTCCATTCAAAATATTGTGG 113124 | || ||||| | | | || | | | | || ||| ||||| |||| | Sbjct 1353545 AAGACATGAAACAACAATTAATAGCTCACAATGGAAGTG------TTCAATATATAAGTG 1353492 Query 113125 ATATTCCAGATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATG 113184 | || |||||||| | ||| |||||||| ||||| |||||||| ||| ||| || Sbjct 1353491 AAATACCAGATGACTTAAAGGAGTTGTACAAAACAGTATGGGAAATTAAGCAAAAGAATA 1353432 Query 113185 TCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCA 113224 | ||||| ||||| ||||| | ||| ||||||||||| Sbjct 1353431 TTATTGATATGGCTGCAGACAGGGGTATTTTCATTGATCA 1353392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620735936519760