Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq6 141 1e-28 >seq6 Length=2947581 Score = 141 bits (156), Expect = 1e-28 Identities = 563/869 (65%), Gaps = 19/869 (2%) Strand=Plus/Plus Query 110286 AGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTC 110345 ||| ||||| || | ||| || |||| | || || | || ||||| | |||||| Sbjct 1354159 AGCTATAGATGCCAAATTACATACAGCAACTTCATCAGGGGATGTATATTCTATAATTTC 1354218 Query 110346 CGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCA 110405 ||| ||||| || ||||| ||| || || || ||||| ||||| | || || Sbjct 1354219 ACAACATAAGTTACTACATTTAATAGTACCTAAATTTTTTTGATTAGATTTAGCATTACA 1354278 Query 110406 TGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGA-ATGGCCT 110464 | ||| ||||| | ||| ||||| ||| ||||| | || | ||| | || || Sbjct 1354279 AGAATCTTTATATAACATATATGGTACACCTGTTTCTATTTG-GCTTTGTAATATAGCAA 1354337 Query 110465 TCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGT 110524 ||||| ||| || | || ||| || | | | ||| || || || || || | Sbjct 1354338 ACCATAAATCTTGAGCAAGAACTGTTTTTTTTCCCATATTTTCTTCTTCATATTTAGTAT 1354397 Query 110525 ACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTG-TCGGGACAG 110583 | || | |||||||| | || | ||| | ||| | | || | ||||| Sbjct 1354398 ATAATTTTTCAAATTCTTCACCCCATGTTTCACTTAAACC-TGGACATTCATTTGGACAC 1354456 Query 110584 AAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATC 110643 | |||| ||||||| | || | ||| |||||||| || || ||||||| ||| | Sbjct 1354457 ATTAGGGTCCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACA 1354516 Query 110644 GCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAA 110703 || | || | || || | ||||| | || || || | || || ||| Sbjct 1354517 GCATAAAATAAATCTCGTGCTCTTAATTCTTCTTTTCCATGATTTTTCCTTAAATCTAAA 1354576 Query 110704 AAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACGA 110763 || || | ||||| || ||||||||||| | ||| ||||| | ||||| ||||| Sbjct 1354577 AATTCAAATATATCTGAATGCCATGGTTCAATATAAACAGCAAAAGATCCTTTACGTTTT 1354636 Query 110764 CC--CGCCTGGTTA-ACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATT 110820 || | ||| | | ||||| | ||| ||| |||| || || || | |||||| | | Sbjct 1354637 CCTCCACCTTGATCTACATATCTTGCAGTGTCATTAAAAACTCTTAACATAGGTACTAAA 1354696 Query 110821 CCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATA 110880 |||| ||| ||||| ||||| ||||| || || | | | ||||| || | Sbjct 1354697 CCATTAGATATTCCATTGGTACCTCTAATATAAGAATTTTGTCCTCTTATGTCTTGTAC- 1354755 Query 110881 TGC-ATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATA 110939 ||| | ||||||||| || || ||||||||| ||||| | | | || || || | Sbjct 1354756 TGCTACACCAATACCTCCTGCAGTTTTACTAATTAAAGCACATTGTTTTAGAGTTTCAAA 1354815 Query 110940 AATACCATCAATCGAATCTGCCTTGTTGGC-AATTAGAAAGCAAGAAGACATCTGAGGAC 110998 |||||| ||||| |||||||| || | | ||| ||||| ||||||||||| || || | Sbjct 1354816 AATACCTTCAATAGAATCTGCTTTCATCGATAATAAGAAA-CAAGAAGACATTTGTGGTC 1354874 Query 110999 GAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCT-TGGGACATC 111057 ||||| || | ||| || | |||||| || ||||| |||| | | | || ||||| Sbjct 1354875 TGGGCGTCCCTGAATTAAATAATGTAGGAGTTGCATGGGTGAA-ATATTTCTGAGACATT 1354933 Query 111058 TTGTTGTATGTGTCGAGTGCGGAGGGTA---CATCTTTACCGTGAATACCAATGGCAACT 111114 | ||||| || || || || ||||| || || |||||||| | |||| Sbjct 1354934 AAATGATATGTTTCTAGAGCTTTATCTATATCATCTATA---TGTATACCAATAGAAACT 1354990 Query 111115 CGCATGAACATATATTGAGGCGTTTCGAT 111143 | ||| || | || |||||| |||| || Sbjct 1354991 CTCATTAATAAATGTTGAGGTCTTTCAAT 1355019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588969867287400