Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq6 100 3e-16 >seq6 Length=2947581 Score = 100 bits (110), Expect = 3e-16 Identities = 244/368 (66%), Gaps = 4/368 (1%) Strand=Plus/Plus Query 106202 TACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAG 106261 ||||| |||||||| || | ||||| || || || |||| || ||| ||| || Sbjct 1353899 TACATTGTTTCAAATATTCTTTTATTCAATTCTTTTGCAGCATCAGATTCATATGGATAT 1353958 Query 106262 CGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGC 106321 | | || |||||| ||| || | ||||| ||||| | ||||||||||||||||| Sbjct 1353959 CTTAATAACATAAATGTATCTGCTAATCCTTGTACACCAATACCAATAGGTCTGTGTCTA 1354018 Query 106322 ATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGA 106381 |||| || || || | || || ||| ||||||| || || | | | || | Sbjct 1354019 GTATTGGATGTTTTTGCCTCTTTGACTGGGTAATAATTTCTTTCTATAATTTTATCTAAA 1354078 Query 106382 TTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCT 106441 ||| |||||| ||| || || ||||||| | |||| | ||| ||| | | | | | Sbjct 1354079 TTTCTGGTAATAATTTTAGTAATTTCATATAACTTTTTAAAATTAAA--TTCTTTTTTTT 1354136 Query 106442 TC--ATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCT 106499 | || ||| | || | || || ||||||||||| || ||||| ||||| Sbjct 1354137 CCAAATCTACAAATTTACATAAAGCTATAGATGCCAAATTACATACAGCAACTTCATCAG 1354196 Query 106500 TATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCT 106559 ||| || |||| |||||| ||| ||||| || ||||| || || ||||| | Sbjct 1354197 GGGATGTATATTCTATAATTTCACAACATAAGTTACTACATTTAATAGTACCTAAATTTT 1354256 Query 106560 TTTGGTTA 106567 |||| ||| Sbjct 1354257 TTTGATTA 1354264 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 9365 TCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTC 9424 ||| |||||||| || |||||||| || |||||||||||| || || || || Sbjct 2420064 TCCTACGGCATCGATTTCATCAATAAAAACAATACATGGTGCATGTTTCTTTGCAGCTTG 2420123 Query 9425 AAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGC 9484 ||| || || | | ||| | || || |||||||||||||| || |||| | || | Sbjct 2420124 AAAAAGTTCTCTTATTCTTCTTGCTCCTACACCAACAAACATTTCTTCAAATTCTGAACC 2420183 Query 9485 GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9544 || ||| | || || ||||||| ||| || ||||| |||| || | | ||| || Sbjct 2420184 TGAGGCTTGTAAAAATGGAACATTAGCTTCTCCTGCAATAGCTCTAGCAATTAAAGTTTT 2420243 Query 9545 ACCCGTACCTGG 9556 || |||||||| Sbjct 2420244 TCCAGTACCTGG 2420255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589974656824920