Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq7 138 1e-27 seq9 102 1e-16 >seq7 Length=694560 Score = 138 bits (152), Expect = 1e-27 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 126920 TACTGGAAGAAGGATAAAGAGTAAAATTTTTATAGGTCCAACATACTATCATCGTCTTAA 126979 || |||||||| | ||||| ||||||||||| || |||||||| ||||| | | || Sbjct 516934 TAATGGAAGAATGTTAAAGTCCAAAATTTTTATTGGACCAACATATTATCAAAGATTAAA 516993 Query 126980 ACATATGGTTAAAGATAAAATGCATGCTAGAAGTCATGGTCAAGTAAC-AACATTACATC 127038 |||||||||| |||||||||| ||||| |||||| || | | |||| | |||||| Sbjct 516994 ACATATGGTTGAAGATAAAATACATGCAAGAAGTAGAGGACCATTAACTATGATTACA-A 517052 Query 127039 GTCAACCAAACTGTGGTCGTTCCCAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAG 127098 | ||||||| || | || || |||||| ||||||||||||||||||||| || Sbjct 517053 GACAACCAACAGAAGGAAGATCAAGAGATGGTGGTCTAAGATTTGGAGAAATGGAAAGAG 517112 Query 127099 ATTGTATTTTGGTTCATGGAGCCACACAATTTTTAAATGAAAGAATGTTT 127148 ||||||| | |||||| | | || | ||||| |||||| | ||| Sbjct 517113 ATTGTATGATATCACATGGATCTGCCAAAATGTTAAAAGAAAGATTATTT 517162 Score = 96.9 bits (106), Expect = 5e-15 Identities = 155/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 126099 TTAAATTATCCTCAAAAACCACTTGT---TACAACCGATATTGCAGAATTTAATGGTCTA 126155 ||| |||| || ||||||||| | || ||||| | ||| | | | || | | | || Sbjct 515702 TTATATTACCCACAAAAACCATTAGTATGTACAAAGGCTATGGAATATTT--ACGTTTTA 515759 Query 126156 AATGAATACCCCAATGGTATTAATGCAATTGTAGCAATCGCGTGTTACACTGGATACAAT 126215 | ||| ||| ||||||||||||||||||||| || |||||| || || || ||| Sbjct 515760 GA-GAACTCCCAGCTGGTATTAATGCAATTGTAGCTATTATGTGTTATACAGGTTATAAT 515818 Query 126216 CAAGAAGATAGTGTTATTCTTAATAAAGCATCTATCGAAAGAGGTTTATTTGGTACCACA 126275 |||||||||||| | ||| | || || ||||||| || | ||||||||| | | | Sbjct 515819 CAAGAAGATAGTTTGATTATGAACCAATCATCTATTGATCGTGGTTTATTTAGAAGTGTA 515878 Query 126276 ACTTATAATACTTTTACAGCGGAAGAAACAAAAAATGGTA 126315 |||| ||||| ||| ||||||| | || | |||| Sbjct 515879 TTTTATCGTACTTATACTAGTGAAGAAAAACAACAAGGTA 515918 >seq9 Length=776283 Score = 102 bits (112), Expect = 1e-16 Identities = 431/663 (65%), Gaps = 36/663 (5%) Strand=Plus/Plus Query 104796 AATTTGATTTAAGTGAAGGAATTGTACCATTGCTTACAACaaaaaaaaTAGT-TTACGCC 104854 |||||||||||||| || ||| | ||||| | || ||||| ||| || | ||| | Sbjct 511496 AATTTGATTTAAGTCAAT--ATT-TCCCATTATTAACTACAAAGAAATTATTCTTAAGAG 511552 Query 104855 AATATTCTTAAAGAATTATTATGGGTGATGAAAGGTTTAACAAATTCTAACT---TGTTA 104911 | ||| || ||||||| | ||| | || | ||| ||||||| ||| ||||| Sbjct 511553 GA-ATTATTGAAGAATTGCTTTGGTTTATTAGAGGAGAAACAAATGGTAATACGCTGTTA 511611 Query 104912 AATGAAATTGGTGTTAAAG-TATGGAATGATAATGGTTCACGTAAGTTTTTAGATTCTTG 104970 ||| | | || ||| | ||||| | | ||||||| | | | ||||||||| | | Sbjct 511612 AATAAGAATG----TAAGGATATGGGAAGCTAATGGTACTAGGGAATTTTTAGATAATAG 511667 Query 104971 TGGATTTCACTTTCGAAAAGAAGGT---GATTTAGGACCAATTTATGGATTTCAATGGAG 105027 ||| |||| | ||||| | ||||||||||| |||||||| ||||||||||| Sbjct 511668 AAAATTA---TTTCATAGAGAAGTTAACGATTTAGGACCTATTTATGGTTTTCAATGGAG 511724 Query 105028 ACATGCTGGAGCTCAATATATCGACTGTG-ATACCGACTATACCGGCCAAGGTATAGACC 105086 |||| |||||| |||||| | | | || || | ||| ||||| | || | Sbjct 511725 ACATTTCGGAGCTGAATATA-CAAATATGCATGATAATTATGAAAATAAAGGTGTTGATC 511783 Query 105087 AATTAAGTCAAGTTATAGAAACT---ATAAAAAATAACCCCGGGTGTCGAAGAATAATTA 105143 |||||| || |||| || | || |||||| | || || ||||||| || Sbjct 511784 AATTAA---AAAATATAATAAATTTAATTAAAAATGATCCTACAAGTAGAAGAATTCTTT 511840 Query 105144 TAGATAGTTGGAATGTGTCACAATTATCAGATATGGCTCTTCCACCGTGTCATTGTTTGG 105203 | | |||||||| | | | | ||||| | || || |||||| ||| Sbjct 511841 TGTGTGCATGGAATGTAAAAGATCTTGACCAAATGGCATTACCTCCTTGTCATATTTTAT 511900 Query 105204 TACAATTTTACATTAGAAATAAAATTTATTTAGATTGTCAATTGTATCAAAGATCTGCAG 105263 |||||||| || || || | ||| ||| |||||||||| || | Sbjct 511901 GTCAATTTTATGTTTTCGATGGAA---AATTATCATGTATTATGTATCAAAGGTCATGTG 511957 Query 105264 ATTTAGGATTAGGTGTACCATATAATATTGGTTTCTATTC-ATTTTTGGTGTGTGTTCTC 105322 |||||||| |||| ||||| | |||||||| || ||||| |||||| | | | | Sbjct 511958 ATTTAGGACTAGGAGTACCTTTTAATATTGCTTCTTATTCTATTTTTACT-CATATGATT 512016 Query 105323 TCAAAATGGTGTAATCT--AACCCCCGGAAAATTTATTCATACTTTTGGAGATGTTCATG 105380 || || |||||| | |||| | | ||||||| || ||| ||| ||| |||| Sbjct 512017 GCACAAGTCTGTAATTTGCAACCTGCCG--AATTTATACACGTTTTAGGAAATGCGCATG 512074 Query 105381 TATATTCTAACCATGTTGACCAATTAAAAATTCAATTAAACAGAAAACCTTACACCTTCC 105440 | ||| ||| || | || |||||||||||| | || |||| ||| || | |||| Sbjct 512075 TTTATAATAATCACATCGATAGTTTAAAAATTCAACTTAATAGAATACCATATCCATTCC 512134 Query 105441 CAA 105443 ||| Sbjct 512135 CAA 512137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658396344376680