Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq6 558 4e-154 >seq6 Length=2947581 Score = 558 bits (618), Expect = 4e-154 Identities = 1151/1703 (68%), Gaps = 46/1703 (3%) Strand=Plus/Plus Query 47123 CTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTC 47182 ||||||||| || ||| || || || |||||||| | |||| | |||| || || Sbjct 1353391 CTGATCAATGAAAATACCCCTGTCTGCAGCCATATCAATAATATTCTTTTGCTTAATTTC 1353450 Query 47183 CCATACTGTTTTATA-AATTTGTTTAATGTCTTCTGGGAGATTAGT---ATTTTGAATAG 47238 |||||||||||| || || | ||||| ||| ||||| | | | | || ||||| | Sbjct 1353451 CCATACTGTTTTGTACAACTCCTTTAA-GTCATCTGGTATTTCACTTATATATTGAACAC 1353509 Query 47239 ATCCTCCgttttctataattttgttttttaat-tcatttgaccaaagttttcgttcagtt 47297 ||| || |||| | || ||| ||| || || | ||| | || |||| | Sbjct 1353510 TTCCATTGTGAGCTATTAATT-GTTGTTTCATGTCTTCATCCCATAAACCTCTTTCAAAT 1353568 Query 47298 aatgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTA 47357 || |||||| | ||| |||||||||| |||||||||| || ||||| | | Sbjct 1353569 AAATCTTTTAACAAATGGGGATTAACAACGAAAAATTCTCCACTTAAAACTCTTCTATAA 1353628 Query 47358 TATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGAT 47417 || |||||||| ||||||||||| | |||||||||||||||| |||||| | ||| ||| Sbjct 1353629 TAAATATTACTAGTATATGGTTCAAAGGATTCATTATTTCCAAGAATTTGTGAAGTAGAT 1353688 Query 47418 GCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNN 47477 || || ||||| | ||| | |||||| ||||||| |||| || | || | Sbjct 1353689 GCAGTTGGCATAGGTGCTAATAATAATGAGTTTCTTAAACCATGCTTACGAATTTTAGCT 1353748 Query 47478 NNNNNNNGTTTCCAATCCCAAAGATCTGATGG-AAC---AACATTCCAAAAATCATATTG 47533 | |||||||||| || || | ||| | ||||||| | |||| |||| Sbjct 1353749 TTTAATTCATCCCAATCCCAAT-ATTTGTTATCAACTTTAGCATTCCACATATCAAATTG 1353807 Query 47534 AAGAATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACC--GTATAGTTTA 47591 | ||||||| || ||| || | ||| | || ||| || || |||||| | Sbjct 1353808 TAATATTCCTTGGCTAGCTGGACTTCCTTGATAGGATTCATATGGTCCATGTATAGA--A 1353865 Query 47592 GCGAGTTCA-CA-ACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGT 47649 || | |||| || || | ||| || ||| ||| || ||||||||||||||| || | | Sbjct 1353866 GCCAATTCAACAGACAT--TTCTAAAGCAGCATAGTACATTGTTTCAAATATTCTTTTAT 1353923 Query 47650 TTAGATTCCTT-GCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCC 47708 | | |||| || || | |||||| | ||||| ||||||||||| Sbjct 1353924 TCA-ATTCTTTTGCAGCATCAGATTCATATGGATATCTTAATAACATAAATGTATCTGCT 1353982 Query 47709 AATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGT 47768 |||||||| |||||||||||||| ||||| || | |||| || | || ||| Sbjct 1353983 AATCCTTGTACACCAATACCAATAGGTCTGTGTCTAGTATTGGATGTTTTTGCCTCTTTG 1354042 Query 47769 AATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATT 47828 | ||| || | ||| | ||||||||||||| || | |||| Sbjct 1354043 ACTGGGTAATAATTTCTTTCTATAATTTTATCTAAATTTCTGGTAATAATTTTAGTAATT 1354102 Query 47829 TCTCTTAATTTATTAAAATCAAACTTGTTATTTATAACAAACCTATTAAGT--------G 47880 || ||| || ||||||| ||| || || ||| | |||| ||| || | | Sbjct 1354103 TCATATAACTTTTTAAAATTAAA-TTCTTTTTTTTC-CAAATCTACAAATTTACATAAAG 1354160 Query 47881 CTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAG 47940 |||||||||| | |||||||||||| || |||| || ||||||| ||| |||||| Sbjct 1354161 CTATAGATGCCAAATTACATACAGCAACTTCATCAGGGGATGTATATTCTATAATTTCAC 1354220 Query 47941 CACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATG 48000 ||||| |||| |||||| |||||||| ||||||| |||||| ||||| | Sbjct 1354221 AACATAAGTTACTACATTTAATAGTACCTAAATTTTTTTGATTAGATTTAGCATTACAAG 1354280 Query 48001 CGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCC 48060 || || || | |||| | ||| || |||||||| || || | |||| || Sbjct 1354281 AATCTTTATATAACATATATGGTACACCTGTTTCTATTTGGCTTTGTAATATAGCAAACC 1354340 Query 48061 AAACAGTCCT-AGCCTTTATAACAGCTCTAGCTT---TATTATCATGTTCGTATTTAGTA 48116 | | | || | ||| | ||| | | | | |||| || | ||| ||||||||| Sbjct 1354341 ATAAA-TCTTGAGCA---AGAACTGTTTTTTTTCCCATATTTTCTTCTTCATATTTAGTA 1354396 Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176 ||||| || |||||||| || || | | | ||| || ||||||||||| |||||| Sbjct 1354397 TATAATTTTTCAAATTCTTCACCCCATGTTTCACTTAAACCTGGACATTCATTTGGACAC 1354456 Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236 || | | ||||| | || | ||| ||||| ||||||| | ||| || | ||| | | Sbjct 1354457 ATTAGGGTCCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACA 1354516 Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGA 48296 || ||||||||| | | ||||| |||||| || ||| ||| | | | || | | Sbjct 1354517 GCATAAAATAAATCTCGTGCTCTTAATTCTTCTTTTCCATGATTTTTCCTTAAATCTAAA 1354576 Query 48297 AAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTA 48356 || || | |||||| | |||||||||||| | ||| | || | ||| ||||| Sbjct 1354577 AATTCAAATATATCTGAATGCCATGGTTCAATATAAACAGCAAAAGATCCTTTACGTTTT 1354636 Query 48357 TTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATA 48416 || |||||||||| |||||| ||||| | ||| ||||||||||||| || || | | Sbjct 1354637 CCTCCACCTTGATCTACATATCTTGCAGTGTCATTAAAAACTCTTAACATAGGTACTAAA 1354696 Query 48417 CCATTTGATATACCATTGGTTCCCGAAATATAAC---TTCCACTAGCTCTTATATTACTA 48473 ||||| ||||| |||||||| || ||||||| || | ||||||| | Sbjct 1354697 CCATTAGATATTCCATTGGTACCTCTAATATAAGAATTTTGTC---CTCTTATGTCTTGT 1354753 Query 48474 ATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCA 48533 | || | ||| ||||| ||||| ||||| |||| |||||| |||| || || ||| Sbjct 1354754 ACTGCTACACCAATACCTCCTGCAGTTTTACTAATTAAAGCACATTGTTTTAGAGTTTCA 1354813 Query 48534 TAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGA 48593 |||| ||||| ||| ||| || |||| ||||| |||||| ||||||||| || Sbjct 1354814 AAAATACCTTCAATAGAATCTGCTTTCATCGATAATAAGAAACAAGAAGACATTTGTGGT 1354873 Query 48594 TGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAAC 48653 || ||||||||||||||||| |||| |||||| | || |||||| || | Sbjct 1354874 CTGGGCGTCCCTGAATTAAATAATGTAGGAGTTGCATGGGTGAAATATTTCTGAGACATT 1354933 Query 48654 AATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGC 48713 || | ||||||||| | | | ||||||||| | ||||||||| ||||| || | | Sbjct 1354934 AAATGATATGTTTCTAGAGCTTTATCTATATCATCTATATGTATACCAATAGAAACTCTC 1354993 Query 48714 ATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTT 48773 ||||| | || |||||||||||||| |||||| ||||| || || | ||| ||| || Sbjct 1354994 ATTAATAAATGTTGAGGTCTTTCAATAATTTTATTATTAATACGTAATAAATAAGATCTT 1355053 Query 48774 TCCAATGTTTTAAAACCAAAATA 48796 ||||| |||||||| |||||||| Sbjct 1355054 TCCAAGGTTTTAAATCCAAAATA 1355076 Score = 324 bits (358), Expect = 2e-83 Identities = 621/898 (69%), Gaps = 37/898 (4%) Strand=Plus/Plus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| ||||| ||||||||| || || || ||||| || || || || |||||||| | Sbjct 127777 CATGACTCCTGATTTTTGATAATCTGCGACCCTTTTCTCGAAAAAGTTTGTTTTTCCTTG 127836 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCC 18776 | ||| || | ||||| ||| |||||||||||| || | ||||| | |||| Sbjct 127837 AAGTGAAATTAAGTCCATCCAATTGAATGGATTTTTTGAATGGAAAATTTTAGAGCATCC 127896 Query 18777 TAA---TTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACA 18833 ||| |||||||| | ||||| || ||||||| |||||| ||| | | | Sbjct 127897 TAAACATTCTAATAAT---CTATCTGCAACAAATTCTATATATTGAGACATAAGTCTAGA 127953 Query 18834 ATTCATTCCTATTAATTTAACAGGTAGTGCATC---TGTAAGAAATTCTTGTTCTATATT 18890 |||||| |||||||| | | |||| || || | ||| | || ||| || | | Sbjct 127954 ATTCATACCTATTAAATCACATGGTAATGATTCACATATAAAAGAT-CTT--TCAACTTC 128010 Query 18891 TACTGCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTT- 18949 ||| || ||| | |||| | || | | ||| | | || ||| || | Sbjct 128011 TACAGCTTCTTTAACAATATTTTGTACCATTTGTTC--TGGAAGTTTATT----ATCTAA 128064 Query 18950 TAAAC-----ATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTC 19004 ||||| || || || |||||| ||||||||| || ||||||||||| ||||| Sbjct 128065 TAAACTATAAATTAAGCAATTAAAATCTGTATGTAGTCCTTCATCTCTACTTATTAATTC 128124 Query 19005 ATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt--AACCAGAATATAGAAGCA 19062 |||| ||||||||||||| | | | | | || ||||| ||||| || |||| | || Sbjct 128125 ATTACTAAATGTTAAACCATGTA--ATTTATTTTGTTTTTTAAACCAAAAAATAGCA-CA 128181 Query 19063 AATGAT-CCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATA 19121 || | | ||| || ||||| ||||| || |||| ||| |||| ||||| || | Sbjct 128182 AAAGCTACCACTGAATAATATTCCTTCAACACATGCATTAGCTACTATCCTTTCAGCAAA 128241 Query 19122 ACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGG 19181 | || | ||| || ||||||||| |||||| || || |||||||| || Sbjct 128242 T---GAATTAGTATCATTAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACTGCAGG 128298 Query 19182 CATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATC 19241 || | ||||||| || ||||| || | | || | | |||||||| ||| ||| Sbjct 128299 GATATTTTCTATAGCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATC 128358 Query 19242 TATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAA 19301 || |||||||| || ||||||||||||||||||||| ||| || ||||| ||||| Sbjct 128359 AATTAATAAACTATATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAA 128418 Query 19302 ACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGA-CCAAATTTTCATTAA 19360 | ||||||||||||| || || || || ||||| || | | ||||||| || | Sbjct 128419 TTTTTTTGCTTCTGTTATTTGAACCTCTCTTAAAAAT-TTACTAGCCAAATTCTCTAATA 128477 Query 19361 CTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTG 19420 |||| |||||||| ||||||||||||||||| ||||| || ||||||||||| |||| || Sbjct 128478 CTATACCATCACTTGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCAT-TG 128536 Query 19421 AGGTT-AATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAA 19479 || ||| | | |||| || | ||| |||||||||| | |||||| |||||||| Sbjct 128537 TCATTCAATTTCTCAAAATCTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAA 128596 Query 19480 AAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATA 19537 || ||||| || ||||| || || | | ||| | ||| ||||| ||| ||| ||| Sbjct 128597 AATGAAGCTTCAGCTTTCTTGTAAAAATCCCAAACTTCAGGATATAATATTGGATATA 128654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562102947042120