Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq6 248 1e-60 >seq6 Length=2947581 Score = 248 bits (274), Expect = 1e-60 Identities = 562/834 (67%), Gaps = 21/834 (3%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| ||||| ||||||||| ||| | || | | | |||||||| ||||| ||||||| Sbjct 127777 CATGACTCCTGATTTTTGATAATCTGCGACCCTTTTCTCGAAAAAGTTTGTTTTTCCTTG 127836 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGA 36991 ||||| || ||||| ||| |||||||| || || | || || ||| Sbjct 127837 AAGTGAAATTAAGTCCATCCAATTGAATGGATTTTTTGAATGGAAAATTTTAGAGCATCC 127896 Query 36992 TAATTCCTTCAGA-AGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGT 37050 ||| | ||| | | ||||| |||||||||||||| |||| | |||| ||| | | | Sbjct 127897 TAAA-CATTCTAATAATCTATCTGCAACAAATTCTATATATTGAGACATAAGTCTAGAAT 127955 Query 37051 TTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAG 37110 | ||||| |||| | ||| | || || | ||| | |||| | | ||||| Sbjct 127956 TCATACCTATTAAATCACATGGTAATGATTCACATATAAAAGATCTTTCAACTTCTACAG 128015 Query 37111 CATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACA 37170 | |||||||| ||||| | | || ||| | | || | ||| | || | | Sbjct 128016 CTTCTTTAACAATATTTTGTACCATTTGTTCTGGAAGTTTATTATCTAATAAACTATAAA 128075 Query 37171 ATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGG 37230 ||| || |||||| ||||| ||||||||||||||||| ||||||||| ||| | Sbjct 128076 TTAAGCAATTAAAATCTGTATGTAGTCCTTCATCTCTACTTATTAATTCATTACTAAATG 128135 Query 37231 TTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT-CCAGAA 37289 |||| || | | | | | |||||||| |||||| || || |||||| | ||| Sbjct 128136 TTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAAAATAGCA-CAAAAGCTACCACTG 128194 Query 37290 AAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAA 37349 || || || |||||||| |||| ||||| | | | | | || |||| || | Sbjct 128195 AATAATATTCCTTCAACACATGCATTAGCTACTATCCTTTCAGCAAA---TGAATTAGTA 128251 Query 37350 TCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCA---ATTGTTTCA 37406 ||| |||||||||| || ||| ||| || ||| || | || || |||| Sbjct 128252 TCATTAATCCATTTTGCTGCCCATAATGCTTTATTTTTTAC---TGCAGGGATATTTTCT 128308 Query 37407 ATTGCTTTTAAGAGAAAGtt--tttttCTTCACTATCTGTTATATAAGTATCAATTAGTA 37464 || || | || | || || | |||||| |||| | |||||| ||||||||| || Sbjct 128309 ATAGCATGAAATA--AATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATA 128366 Query 37465 AACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAG 37524 ||||||| |||| || ||||||||||| | |||||| |||||| |||||| | | Sbjct 128367 AACTATATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTTG 128426 Query 37525 CTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCAT 37584 |||| | || |||||| || | ||||| | |||| || || || ||||| |||| Sbjct 128427 CTTCTGTTATTTGAACCTCTCTTAAAAATTTACTAGCCAAATTCTCTAATACTATACCAT 128486 Query 37585 CACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGAT--AA 37642 |||| |||||||| || || | |||| |||||||||||| | |||| | | || || Sbjct 128487 CACTTGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCAT--TGTCATTCAA 128544 Query 37643 TTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 ||| | |||| || | ||| | |||||||||| ||| || | |||||||| Sbjct 128545 TTTCTCAAAATCTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAA 128598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592310632501320