Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq6 329 2e-85 >seq6 Length=2947581 Score = 329 bits (364), Expect = 2e-85 Identities = 1018/1548 (66%), Gaps = 78/1548 (5%) Strand=Plus/Plus Query 25015 AAATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGA--AGTGAATGGTTCAAAACAT 25072 |||||||||| ||||||||||| | |||| | | | ||| |||||||||| || Sbjct 1353601 AAATTCTCCACTTAAAACTCTTCTA--TAATAAATATTACTAGTATATGGTTCAAAGGAT 1353658 Query 25073 TCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAA 25132 ||||||||||| | ||||| ||||||||||| |||||||| ||||| ||||| || Sbjct 1353659 TCATTATTTCCAAGAATTTGTGAAGTAGATGCAGTTGGCATAGGTGCTAATAATAATGAG 1353718 Query 25133 TTTCTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAATCTAAA---TTATTA 25189 ||||| ||||||| ||| ||| | |||||||| ||||||||| || || ||| Sbjct 1353719 TTTCTTAAACCATGCTTACGAATTTTAGCTTTTAATTCATCCCAATCCCAATATTTGTTA 1353778 Query 25190 TCTAACTCGATATCGTTATCATATAAATCAAATTGTAACAATCC---ACTTGCTGCAGGC 25246 || |||| || | || || || |||||||||||| | ||| || |||| | Sbjct 1353779 TC-AACT--TTAGCATT-CCACAT--ATCAAATTGTAATATTCCTTGGCTAGCTGGACTT 1353832 Query 25247 GATTGATCAAAAGTTGAATATTTACCTTTTGTTATTGCCATATCTTTTGATTGCTCTAAC 25306 ||||| | | | |||| || | | | |||| || || ||||| Sbjct 1353833 CCTTGAT---AGGATTCATATGGTCCATGTATAGAAGCCAATTCAACAGACATTTCTAAA 1353889 Query 25307 GCAGCATAATACATATTTTCAAAAATCGCTTTGTTTAAAAACTTAGCTTTTTCTCCATCG 25366 |||||||| ||||| ||||||| || ||| || || || ||||| | |||| Sbjct 1353890 GCAGCATAGTACATTGTTTCAAATATTCTTTTATTCAA----TT--CTTTTGCAGCATCA 1353943 Query 25367 AAAGCA-----ATTTC-CATTAAGGCGAACGTATCTGCTAATCCCTGAACTCCTAATCCA 25420 | || || || | ||| || |||||||||||||| || || || | ||| Sbjct 1353944 GATTCATATGGATATCTTAATAACATAAATGTATCTGCTAATCCTTGTACACCAATACCA 1354003 Query 25421 ACTGGACGATGTTTATTATTACTTATCTCAGTTTCTGATGTTGGATAGAAATTTGTATCG 25480 | || | ||| || |||| | | | | ||| ||| || ||||| | || Sbjct 1354004 ATAGGTCTGTGTCTAGTATTGGATGTTTTTGCCTCTTTGACTGGGTAATAATTTCTTTCT 1354063 Query 25481 ATCACATTATCTAGATTCTTTATGGCAA-GCTTTGTGTATTTTC--TCAACTCAATAAAG 25537 || | ||||||| | ||| ||| || ||| ||| |||| |||| |||| Sbjct 1354064 ATAATTTTATCTAAA---TTTCTGGTAATAATTTTAGTAATTTCATATAACTTTTTAAAA 1354120 Query 25538 TCAAAATAAGGCTTATCGTTTATATCTCTTTTTACAAATTTAGATAAAGCGATTGATGCT 25597 | ||| || ||| | || | |||||||||| ||||||| || ||||| Sbjct 1354121 TTAAA---------TTCTTTTTTTTCCAAATCTACAAATTTACATAAAGCTATAGATGCC 1354171 Query 25598 AAATTACAAACAGCTTGTTCTTTCCCGTCAGAATATTCATTGATCTCGATACATAAGTTG 25657 |||||||| ||||| ||| | | | |||||| | || || ||||||||| Sbjct 1354172 AAATTACATACAGCAACTTCATCAGGGGATGTATATTCTATAATTTCACAACATAAGTTA 1354231 Query 25658 CTAGATTTGATTACTCCATAATTCTTTTGATTATTGCATGTATTGACAA-TATCTTTATA 25716 ||| |||| || || |||| ||||||||| | ||| |||| ||||||||| Sbjct 1354232 CTACATTTAATAGTACCTAAATTTTTTTGATTAGATTTAGCATT-ACAAGAATCTTTATA 1354290 Query 25717 TCCTAAATATGGCGTTCCTGTTTCAATTTGAGATACTAAAATTTTCTCCCAAAGTTCTCT 25776 | | |||||| |||||||| ||||| | ||| || ||| | ||| Sbjct 1354291 TAACATATATGGTACACCTGTTTCTATTTGGCTTTGTAATATAGCAAACCATAAATCTTG 1354350 Query 25777 CGCTTTTACTTTCTTTACGAAGTTACCATCAGAAACAGCTCTTTCGTAAAGTTCAACAAA 25836 || ||| | ||| || |||| | | ||| | | || | | | Sbjct 1354351 AGCAAGAACTGTTTTT-----TTTCCCAT-------ATTTTCTTCTTCATATTTAGTATA 1354398 Query 25837 TTCTTGATTTATTTTCTCAGAGAAAAGTTTGCCATATTTATTGAGAATAATATTTGGACA 25896 | || || | |||| | |||| | || | || | | || ||||||| Sbjct 1354399 TAATT-TTTCAAATTCTTCACCCCATGTTTCACTTAAACCTGGACATTCAT--TTGGACA 1354455 Query 25897 GAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACAT 25956 | || ||||| ||||| | |||| ||| |||||| | ||| |||| ||| | Sbjct 1354456 CATTAGGGTCCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATAC 1354515 Query 25957 TGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAA 26016 |||||||||||||||| ||||| | |||||||||||| ||||| || ||| |||||| Sbjct 1354516 AGCATAAAATAAATCTCGTGCTCTTAATTCTTCTTTTCCATGATTTTTCCTTAAATCTAA 1354575 Query 26017 GAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTT 26076 || ||||| |||||||| ||||||||||| | ||| | ||||||| ||||| | ||| Sbjct 1354576 AAATTCAAATATATCTGAATGCCATGGTTCAATATAAACAGCAAAAGATCCTTTACGTTT 1354635 Query 26077 TCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAA 26136 |||||||||||||||||| ||||||||||| ||||| |||||| | ||||| || ||||| Sbjct 1354636 TCCTCCACCTTGATCTACATATCTTGCAGTGTCATTAAAAACTCTTAACATAGGTACTAA 1354695 Query 26137 TCCAGTTGAAAATCCGTTTGTGCTATGAATCT-TGGATCCTGTCGATCTAATATCGTGAG 26195 ||| | || | ||| || || | ||| | | || |||| ||| || || || Sbjct 1354696 ACCATTAGATATTCCATTGGTACCTCTAATATAAGAATTTTGTC-CTCTTATGTCTTGTA 1354754 Query 26196 CATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAACTGTATCGA 26255 | | ||| || || || || ||| ||| ||||| | | | || || | Sbjct 1354755 CTGCTACACCAATACCTCCTGCAGTTTTACTAATTAAAGCACATTGTTTTAGAGTTTCAA 1354814 Query 26256 AAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAAT 26315 |||| |||| || ||| ||||||| |||||| ||||||||||| | ||| | Sbjct 1354815 AAATACCTTCAATAGAATCTGCTTTCATCGATAATAAGAAACAAGAAGACATTTGTGGTC 1354874 Query 26316 GAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCTTC----AC-T 26370 | || ||||||||||||||||| || || ||||| || ||||| ||| || | Sbjct 1354875 TGGGCGTCCCTGAATTAAATAATGTAGGAGTTGCATGGGTGAAATAT--TTCTGAGACAT 1354932 Query 26371 CAAAGCTGTATAAGTTTCAAGAACTTCATCGATATTGTAATTACTAACTTCAATAGCTGT 26430 ||| || ||| ||||| ||| ||| ||| |||| | || | |||||| Sbjct 1354933 TAAA--TG-ATATGTTTCTAGAGCTTTATCTATATCATCTATATGTATACCAATAGAAAC 1354989 Query 26431 TCTTAACCACATATATTGAGGTCGTTCAATTACATTATTTTCCGCATCTCTAATCAAATA 26490 ||| | | | || |||||||| |||||| | ||||| | || |||| ||||| Sbjct 1354990 TCTCATTAATAAATGTTGAGGTCTTTCAATAATTTTATTAT--TAATACGTAAT-AAATA 1355046 Query 26491 AGATTTTTCTAAAGTTTTCAATCCAAAATAATCATGATTGAAATCTCT 26538 |||| |||| || ||||| |||||||||||||||| ||| ||||| || Sbjct 1355047 AGATCTTTCCAAGGTTTTAAATCCAAAATAATCATAATTAAAATCCCT 1355094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253037431090475