Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq6 105 8e-18 >seq6 Length=2947581 Score = 105 bits (116), Expect = 8e-18 Identities = 805/1286 (63%), Gaps = 24/1286 (2%) Strand=Plus/Minus Query 75305 TTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGT 75364 |||| || ||||| || || | || ||| | || || || ||||| || ||||| | Sbjct 1354917 TTCACCCATGCAACTCCTACATTATTTAATTCAGGGACGCCCAGACCACAAATGTCTTCT 1354858 Query 75365 TGCTTCCT--TATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGG 75422 || ||| | ||||| | ||| || | || || | ||||| | || |||||| | Sbjct 1354857 TGTTTCTTATTATCGATGA-AAGCAG-ATTCTATTGAAGGTATTTTTGAAACTCTAAAAC 1354800 Query 75423 AGTGTGCGCAAATC--TCAAAGTGGGCTGGGGGTATTGGGAT-GCACATCCATGATGTGA 75479 | ||||| ||| | ||| || | || |||||||| | ||| | || || | | Sbjct 1354799 AATGTGCTTTAATTAGTAAAACTG--CAGGAGGTATTGGTGTAGCAG-TACAAGACATAA 1354743 Query 75480 GAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGC 75539 ||| | || ||| |||| | || || ||||| ||| ||||| | | || ||| Sbjct 1354742 GAGGACAAAATTCTTATATTAGAGGTACCAATGGAATATCTAATGGTTTAGTACCTATGT 1354683 Query 75540 TTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGT---CGCAAGGGGT 75596 | | || ||||| | ||| || | |||||| |||||| || | || || || | Sbjct 1354682 TAAGAGTTTTTAATGACACTGCAAGATATGTAGATCAAGGTGGAGGAAAACGTAAAGGAT 1354623 Query 75597 CCATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGAC 75656 | | || || || | |||||||||||| | ||||| | || || | || ||| | Sbjct 1354622 CTTTTGCTGTTTATATTGAACCATGGCATTCAGATATATTTGAATTTTTAGATTTAAGGA 1354563 Query 75657 TCAACCAAGGTGACGAAGAGGCTCGGTGTA-GAGATCTCTTTTCATCCCTGTGGATTCCA 75715 || || || | ||||| | | | | ||||| | |||| | | ||| |||| Sbjct 1354562 AAAATCATGGAAAAGAAGAAT-TAAGAGCACGAGATTTATTTTATGCTGTATGGGTTCCT 1354504 Query 75716 GACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAG 75775 || ||||| |||||| | ||| | || | | ||| | || | |||||| | | Sbjct 1354503 GATCTTTTTATGAAGAGAGTTAAAGAAAATAAAAATTGGACCCTAATGTGTCCAAATGAA 1354444 Query 75776 GCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAA 75835 |||||| | || | |||||| || |||||| | || || || |||||| Sbjct 1354443 TGTCCAGGTTTAAGTGAAACATGGGGTGAAGAATTTGAAAAATTATATACTAAATATGAA 1354384 Query 75836 GAGGAGGGTAGAGCCAATGCGACTGTACCAGCCGCCGATGTTTGGAAGGCTATTCT-CAA 75894 || || || | || || || | || ||| | ||| ||||| | ||| Sbjct 1354383 GAAGAAAATATGGGAAAAAAAACAGTTCTTGCTCAAGATTTATGGTTTGCTATATTACAA 1354324 Query 75895 ATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAG 75954 | | || | || || || |||||||||| | || || ||| ||||||| || Sbjct 1354323 AGC-CAAATAGAAACAGGTGTACCATATATGTTATATAAAGATTCTTGTAATGCTAAATC 1354265 Query 75955 TAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTA 76014 ||| ||||| ||||| || || || || | || | || |||||| |||| || Sbjct 1354264 TAATCAAAAAAATTTAGGTACTATTAAATGTAGTAACTTATGTTGTGAAATTATAGAATA 1354205 Query 76015 CACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGT 76074 ||| ||||| ||||| || ||||||||||| || || | || | ||| Sbjct 1354204 TACATCCCCTGATGAAGTTGCTGTATGTAATTTGGCATCTATAGCTTTATGTAAATTTGT 1354145 Query 76075 CAAT--GAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTT 76132 || | | | | | | ||| ||| | |||| | ||||||| || || ||| || Sbjct 1354144 AGATTTGGAAAAAAAAGAA--TTTAATTTTAAAAAGTTATATGAAATTACTAAAATTATT 1354087 Query 76133 ACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAG 76192 |||| |||| || | | | || || ||||||| ||| || || | || || Sbjct 1354086 ACCAGAAATTTAGATAAAATTATAGAAAGAAATTATTACCCAGTCAAAGAGGCAAAAACA 1354027 Query 76193 TCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATT 76252 || |||| ||||||||||||||||| | ||||| ||||| | || ||| |||||| Sbjct 1354026 TCCAATACTAGACACAGACCTATTGGTATTGGTGTACAAGGATTAGCAGATACATTTATG 1353967 Query 76253 TTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAA 76312 || | | || ||| ||| || |||| || || || ||||| | || |||||| Sbjct 1353966 TTATTAAGATATCCATATGAATCTGATGCTGCAAAAGAATTGAATAAAAGAATATTTGAA 1353907 Query 76313 ACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTAT 76372 || ||||| | || | | || | | |||||||||| || || | ||| Sbjct 1353906 ACAATGTACTATGCTGCTTTAGAAATGTCTGTTGAATTGGCTTCTATACATGGACCATAT 1353847 Query 76373 GAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGT 76432 || | | | | || ||| || |||||| | | || |||||||||||| | | | Sbjct 1353846 GAATCCTATCAAGGAAGTCCAGCTAGCCAAGGAATATTACAATTTGATATGTGGAATGCT 1353787 Query 76433 GAAACCAAGCTCAACTA---CGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGT 76489 || | ||| || || ||||||| | || | || || | ||| Sbjct 1353786 AAAGTTGATAACAAATATTGGGATTGGGATGAATTAAAAGCTAAAATTCGTAAGCATGGT 1353727 Query 76490 CTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGT 76549 | | ||| | || | ||||| |||||||| || || || ||||||| | || Sbjct 1353726 TTAAGAAACTCATTATTATTAGCACCTATGCCAACTGCATCTACTTCACAAATTCTTGGA 1353667 Query 76550 AATAATGAATGCTTTGAACCATACAC 76575 |||||||||| |||||||||||| || Sbjct 1353666 AATAATGAATCCTTTGAACCATATAC 1353641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596563388219040