Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq5 187 4e-42 seq169 174 3e-38 >seq5 Length=2479031 Score = 187 bits (206), Expect = 4e-42 Identities = 177/226 (78%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 193151 TACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTC 193210 ||||| || ||||||| || || ||||||||| || ||||| ||||| ||| || Sbjct 2307615 TACCAAGTGTAATGTAGATTCCTTTTGAATATTATAATCTGATAATGTTCTTCCATCTTC 2307674 Query 193211 TAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTG 193270 |||||||||||| ||||| |||||||| ||||||||||| || ||||||||||||||||| Sbjct 2307675 TAATTGTTTTCCAGCAAATATTAATCTTTGTTGATCAGGTGGAATTCCTTCTTTATCTTG 2307734 Query 193271 TATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTT 193330 ||||| | || | ||| ||| ||||| || | |||||| || || || || ||||| Sbjct 2307735 AATTTTTGCCTTCACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATTGTTTT 2307794 Query 193331 ACCTGTTAGCGTTTTTACAAATATTTGCATTTTATTAGTAAAATAA 193376 || |||| ||||| ||||| ||||||||||| ||| | ||||| Sbjct 2307795 TCCAGTTAATGTTTTAACAAAAATTTGCATTTTCTTAAAATAATAA 2307840 >seq169 Length=6603 Score = 174 bits (192), Expect = 3e-38 Identities = 195/260 (75%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 193103 ATTaaaaaaaCCCGAGTAAGTAAT--TTATATACCACCTCTCAATCGAAGTACCAGATGC 193160 |||||||||| | ||| ||| ||| | ||||||||| |||| | || | || Sbjct 5292 ATTAAAAAAAAAATAATAATAAATAATTAAAAACCACCTCTTAATCTTAACACTAAGTGT 5351 Query 193161 AATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTT 193220 || || | ||||| |||||| || || |||| ||||| || |||||||||||| Sbjct 5352 AAGGTGGATTCTTTTTGAATATTGTAATCTGATAGAGTTCTTCCGTCCTCTAATTGTTTT 5411 Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 |||||||| |||||||| ||||| ||||| || ||||||||||||||||| ||||| | | Sbjct 5412 CCGGCAAATATTAATCTTTGTTGGTCAGGTGGAATTCCTTCTTTATCTTGAATTTTTGCT 5471 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | ||| ||| || || || | ||||| || ||||| || ||||| ||||||| Sbjct 5472 TTAACATTCTCAATGGTGTCAGATGGTTCAACATCGAGAGTAATGGTTTTTCCTGTTAAT 5531 Query 193341 GTTTTTACAAATATTTGCAT 193360 ||||| ||||| |||||||| Sbjct 5532 GTTTTAACAAAAATTTGCAT 5551 Score = 159 bits (176), Expect = 6e-34 Identities = 162/211 (77%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||||||||| | || | || | || ||||||| || || ||| || Sbjct 5543 AATTTGCATACCACCTCTTAGTCTTAACACTAAGTGTAATGTAGATTCCTTTTGAATGTT 5602 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| ||||| ||||| ||| |||||||||||||| ||||| |||||||| ||||| Sbjct 5603 GTAGTCTGATAATGTTCTTCCATCTTCTAATTGTTTTCCAGCAAATATTAATCTTTGTTG 5662 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||| || ||||||||||||||||| ||||| | |||| ||| |||||| || || Sbjct 5663 GTCAGGTGGAATTCCTTCTTTATCTTGAATTTTTGCCTTTACATTCTCAATAGTGTCAGA 5722 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 | ||| || || || ||||||||||| ||| Sbjct 5723 TGGCTCGACGTCAAGGGTTATAGTTTTTCCT 5753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899645032348560