Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq6 284 2e-71 seq169 156 6e-33 seq5 149 9e-31 >seq6 Length=2947581 Score = 284 bits (314), Expect = 2e-71 Identities = 578/846 (68%), Gaps = 25/846 (3%) Strand=Plus/Plus Query 17864 TTTTTG-TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAA 17922 |||||| || ||| |||| |||||||||| || ||||| ||||||| | ||| ||||| Sbjct 127789 TTTTTGATAATCTGCGACCCTTTTCTCGAAAAAGTTTGTTTTTCCTTGAAGTGAAATTAA 127848 Query 17923 ATTCATAAAATCAAATGGATTAGTGGTTTTATA---ATATTTTTCTTGTAT--TAATTCG 17977 | ||| ||| |||||||| |||| | | | |||| | || ||| Sbjct 127849 GTCCATCCAATTGAATGGATT-----TTTTGAATGGAAAATTTTAGAGCATCCTAAACAT 127903 Query 17978 TATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGC-AATTCATACC 18036 | ||||||||||||||| |||||||| | |||||| ||||| || || |||||||||| Sbjct 127904 TCTAATAATCTATCTGCAACAAATTCTATATATTGAGACAT-AAGTCTAGAATTCATACC 127962 Query 18037 TAGTAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTT 18096 || || | |||| | ||| ||||| | | || | || |||| ||||| Sbjct 127963 TATTAAATCACATGGTAATGATTCACATATAAAAGATCTTTCAACTTCTACAGCTTCTTT 128022 Query 18097 TATTATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAA 18156 | || ||| |||| | || ||| | ||||||| || | ||||| | ||| Sbjct 128023 AACAATATTTTGTACCATTTGTTCTGGAAGTTTATTATCTAATAAACTATAA---ATTAA 128079 Query 18157 ACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAA 18216 || |||||| || |||| ||||||||||| ||||||||| |||||||| ||||| Sbjct 128080 GCAATTAAAATCTGTATGTAGTCCTTCATCTCTACTTATTAATTCATTACTAAATGTTAA 128139 Query 18217 CCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAA 18276 || | | | || | |||||| | |||||| || | || |||| | || || Sbjct 128140 ACCATGTAATTTATTTTGTTTTTTAAACCAAAAAATAGCACAAAAGCTACCACTGAATAA 128199 Query 18277 TATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAG 18336 ||| || ||||| || || |||| || ||||||||||| || ||| | ||| Sbjct 128200 TATTCCTTCAACACATGCATTAGCTACTATCCTTTCAGCAAA--TGAATTAGT--ATCAT 128255 Query 18337 T-ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNA-TACACGGTATACTCTCTATAGCA 18394 | ||||||||| ||||||| | ||| | | || || ||| | ||||||||| Sbjct 128256 TAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACTGCA-GGGATATTTTCTATAGCA 128314 Query 18395 TTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATAC 18454 | ||| |||| | ||||||| |||||| |||||| | || ||||| ||| ||| Sbjct 128315 TGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTATAT 128374 Query 18455 ATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGA 18514 |||| ||||| || |||| | |||||| |||||| |||||| | | || || | Sbjct 128375 GTTTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCTGTT 128434 Query 18515 TATTGAATCTCGCTATAAAATCTTTCTA-CCAAATTCTCATTAACTATACCGTCAGCAGA 18573 ||||| ||| || ||||| || ||| |||||||||| |||||||| ||| | Sbjct 128435 ATTTGAACCTCTCT-TAAAAATTTACTAGCCAAATTCTCTAATACTATACCATCACTTGC 128493 Query 18574 TGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCA 18633 ||| |||||||| || |||| || || |||||||| ||||| || || | || | | Sbjct 128494 TGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTGTCATTCAATTTCTCAAA 128553 Query 18634 TTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTG 18693 || | || ||| | |||| ||||| |||||| | ||||||||| || | ||| || | Sbjct 128554 ATCTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATGAAGCTTCAGCTTT 128613 Query 18694 TTTGTA 18699 ||||| Sbjct 128614 CTTGTA 128619 >seq169 Length=6603 Score = 156 bits (172), Expect = 6e-33 Identities = 176/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||||||||| || |||||||| ||||| | || || ||| ||| Sbjct 5551 ATGCAAATTTTTGTTAAAACATTAACAGGAAAAACCATTACTCTCGATGTTGAACCATCT 5492 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| ||||| |||||||||||||| || || || || ||| Sbjct 5491 GACACCATTGAGAATGTTAAAGCAAAAATTCAAGATAAAGAAGGAATTCCACCTGACCAA 5432 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| || | |||||| || || | || || |||||| |||||||||| ||| Sbjct 5431 CAAAGATTAATATTTGCCGGAAAACAATTAGAGGACGGAAGAACTCTATCAGATTACAAT 5372 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGTAAAATT 156058 || ||||| | || | || |||||||||||||||||||| ||| | |||| Sbjct 5371 ATTCAAAAAGAATCCACCTTACACTTAGTGTTAAGATTAAGAGGTGGTTTTTAATT 5316 Score = 114 bits (126), Expect = 2e-20 Identities = 148/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 155850 GGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAA 155909 ||||||||||| || | || ||||| ||||| | |||| || || || ||| Sbjct 5752 GGAAAAACTATAACCCTTGACGTCGAGCCATCTGACACTATTGAGAATGTAAAGGCAAAA 5693 Query 155910 ATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAG 155969 || |||||||||||||| || || || || ||||||||||| || | ||| || || || Sbjct 5692 ATTCAAGATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATTTGCTGGAAAACAA 5633 Query 155970 CTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAG-AGGCGACGCTTCATTT 156028 | |||||| ||||| |||||||| || || || || |||| | | || | || || Sbjct 5632 TTAGAAGATGGAAGAACATTATCAGACTACAACAT-TCAAAAGGAATCTACATTACACTT 5574 Query 156029 AGTGTTAAGATTAAGAGGCGGT 156050 |||||||||| ||||||| ||| Sbjct 5573 AGTGTTAAGACTAAGAGGTGGT 5552 >seq5 Length=2479031 Score = 149 bits (164), Expect = 9e-31 Identities = 152/197 (77%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 155816 TAATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGA 155875 ||| ||||||||||| ||| |||||||||| ||||||||||| ||||| | || || || Sbjct 2307831 TAAGAAAATGCAAATTTTTGTTAAAACATTAACTGGAAAAACAATTACCCTTGATGTTGA 2307772 Query 155876 AGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCC 155935 ||||||| ||| || ||||| ||||| |||||||||||||| || || || Sbjct 2307771 GCCATCTGATACGATTGAGAATGTGAAGGCAAAAATTCAAGATAAAGAAGGAATTCCACC 2307712 Query 155936 AGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGA 155995 || ||||||||||| || | ||| || || || | |||||| ||||| |||||||| Sbjct 2307711 TGATCAACAAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGAACATTATCAGA 2307652 Query 155996 TTATAATATATCCAAAG 156012 ||||||||| || |||| Sbjct 2307651 TTATAATAT-TCAAAAG 2307636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731864379382800