Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq6 306 7e-78 seq5 194 3e-44 seq169 178 3e-39 >seq6 Length=2947581 Score = 306 bits (338), Expect = 7e-78 Identities = 548/793 (69%), Gaps = 20/793 (3%) Strand=Plus/Plus Query 49580 TGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAA 49639 ||| ||||| | ||| ||| ||||||||||| | || || ||||| | | | Sbjct 127840 TGAAATTAAGTCCATCCAATTGAATGGATTTTTTGAATGGAAA-ATTTTAGAGCATCCTA 127898 Query 49640 TACATA-TAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCA 49698 |||| |||||||||||| || |||||||| | |||||| ||||| | | | |||||| Sbjct 127899 AACATTCTAATAATCTATCTGCAACAAATTCTATATATTGAGACATAAGTCTAGAATTCA 127958 Query 49699 TACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagctt 49758 |||| | ||| | | ||||||||| ||| ||||| | |||| | ||||||||||| Sbjct 127959 TACCTATTAAATCACATGGTAATGATTCACATATAAAAGATCTTTCAACTTCTACAGCTT 128018 Query 49759 gtttaattatcataattatattatt--ttttgataattta-tatttaatatgattcgcat 49815 ||||| || || || || ||| || || | |||| ||| ||||| | || Sbjct 128019 CTTTAACAAT-AT-TTTGTACCATTTGTTCTGGAAGTTTATTATCTAATAAACT----AT 128072 Query 49816 atattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAA 49875 | ||||| || |||||| ||||||| || || || ||| ||| ||||||||||||| Sbjct 128073 AAATTAAGCAATTAAAATCTGTATGTAGTCCTTCATCTCTACTTATTAATTCATTACTAA 128132 Query 49876 AAGTTAATCC-TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTA 49934 | ||||| || || ||| || | | ||||||| |||||| || | ||| |||| | Sbjct 128133 ATGTTAAACCATGTAATTTATTTTGT-TTTTTAAACCAAAAAATAGCACAAAAGCTACCA 128191 Query 49935 GAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATT-- 49992 || ||||| || || ||||| ||| |||| ||| ||| | ||| || |||| Sbjct 128192 CTGAATAATATTCCTTCAACACATGCATTAGCTACTATCCTTTCAGCAA--ATGAATTAG 128249 Query 49993 TATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTT 50052 |||||| || ||||| ||| ||||| |||||| ||||| | | ||| ||||||| Sbjct 128250 TATCAT-TA--ATCCATTTTGCTGCCCATAATGCTTTATTTTTTACTGCAGGGATATTTT 128306 Query 50053 CTATAGCTTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATA 50112 ||||||| | |||||| | | |||| | ||||||| Sbjct 128307 CTATAGCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATA 128366 Query 50113 AAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTG 50172 || ||| |||| ||||| | | ||| | |||||||||||| |||||||||| | ||| Sbjct 128367 AACTATATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTTG 128426 Query 50173 CTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCAT 50232 |||||| ||||| || || ||| | | |||||||| |||| ||||||| Sbjct 128427 CTTCTGTTATTTGAACCTCTCTTAAAAATTTACTAGCCAAATTCTCTAATACTATACCAT 128486 Query 50233 CAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAAT 50292 || |||||| || |||||||| || | || ||||||||||| ||||| || || || | Sbjct 128487 CACTTGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTGTCATTCAATT 128546 Query 50293 TTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTA 50352 | || || || | |||| | |||||||| | ||||||| |||||||||||| ||| Sbjct 128547 TCTCAAAATCTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATGAAGCTT 128606 Query 50353 CGGATTTTTTATA 50365 | | ||| || || Sbjct 128607 CAGCTTTCTTGTA 128619 Score = 86.0 bits (94), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 129701 AATGGATTAAAATATTTACATAAAATAAAAATAGTACATTGTGATTTAAAACCAGAGAAT 129760 |||| | || |||||||||||||||||||||||||||| | |||||||||||||| ||| Sbjct 2038109 AATGCAATAGAATATTTACATAAAATAAAAATAGTACACAGAGATTTAAAACCAGAAAAT 2038168 Query 129761 ATATTAT 129767 || |||| Sbjct 2038169 ATTTTAT 2038175 >seq5 Length=2479031 Score = 194 bits (214), Expect = 3e-44 Identities = 179/224 (80%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 192327 TACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCAT 192385 ||| || ||||| |||| || ||| || ||||||||||| |||||||||| | |||| | Sbjct 2307615 TACCAAGTGTAATGTAGATTCCTTTTGA-ATATTATAATCTGATAATGTTCTTCCATCTT 2307673 Query 192386 CCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTT 192445 | |||||||| |||||||| |||||||| |||||||||||||| |||||||||||||||| Sbjct 2307674 CTAATTGTTTTCCAGCAAATATTAATCTTTGTTGATCAGGTGGAATTCCTTCTTTATCTT 2307733 Query 192446 GTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTT 192505 | ||||| || ||||| || | ||| || | || || || || ||||| |||| Sbjct 2307734 GAATTTTTGCCTTCACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATTGTTT 2307793 Query 192506 TACCAGTTAATGTTTTAATAAATATCTGCATTTTATTAGaaaaa 192549 | |||||||||||||||| ||| || |||||||| ||| || || Sbjct 2307794 TTCCAGTTAATGTTTTAACAAAAATTTGCATTTTCTTAAAATAA 2307837 >seq169 Length=6603 Score = 178 bits (196), Expect = 3e-39 Identities = 178/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192306 AATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATC 192365 || ||||||||| | | ||| ||||| ||||| || | ||||| ||||| ||||| Sbjct 5321 AAAACCACCTCTTAATCTTAACACTAAGTGTAAGGTGGATTCTTTTTGAATATTGTAATC 5380 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 |||| |||| | | || || |||||||| || ||||| |||||||| ||||| ||||| Sbjct 5381 TGATAGAGTTCTTCCGTCCTCTAATTGTTTTCCGGCAAATATTAATCTTTGTTGGTCAGG 5440 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| ||||||||||||||||| ||||| ||| ||||| || | || || | ||| Sbjct 5441 TGGAATTCCTTCTTTATCTTGAATTTTTGCTTTAACATTCTCAATGGTGTCAGATGGTTC 5500 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || |||||||||||||| || ||||||||||||| ||| || ||||| Sbjct 5501 AACATCGAGAGTAATGGTTTTTCCTGTTAATGTTTTAACAAAAATTTGCAT 5551 Score = 154 bits (170), Expect = 3e-32 Identities = 158/204 (77%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT-CTTTAGAGATATTATAATC 192365 ||||||||||| || | ||| ||||| ||||| |||| | |||| || || || || || Sbjct 5550 ATACCACCTCTTAGTCTTAACACTAAGTGTAATGTAGATTCCTTTTGA-ATGTTGTAGTC 5608 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 |||||||||| | |||| || |||||||| |||||||| |||||||| ||||| ||||| Sbjct 5609 TGATAATGTTCTTCCATCTTCTAATTGTTTTCCAGCAAATATTAATCTTTGTTGGTCAGG 5668 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| ||||||||||||||||| ||||| |||||||| |||| || || | || Sbjct 5669 TGGAATTCCTTCTTTATCTTGAATTTTTGCCTTTACATTCTCAATAGTGTCAGATGGCTC 5728 Query 192486 TACTTCTAGAGTAATGGTTTTACC 192509 || || || || || ||||| || Sbjct 5729 GACGTCAAGGGTTATAGTTTTTCC 5752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984469492829550