Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq6 295 1e-74 seq169 201 2e-46 seq5 181 2e-40 >seq6 Length=2947581 Score = 295 bits (326), Expect = 1e-74 Identities = 575/847 (68%), Gaps = 24/847 (3%) Strand=Plus/Plus Query 38830 ATTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTA 38889 ||||||| || || | || |||| |||||||||||||||||||||| | ||| |||| Sbjct 127788 ATTTTTGATAATCTGCGACCCTTTTCTCGAAAAAGTTTGTTTTTCCTTGAAGTGAAATTA 127847 Query 38890 AATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATA-T 38948 | | ||| ||| ||||||||||| | || || ||||| | | | |||| | Sbjct 127848 AGTCCATCCAATTGAATGGATTTTTTGAATGGAAA-ATTTTAGAGCATCCTAAACATTCT 127906 Query 38949 AATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAAT 39008 ||||||||||| || |||||||| | |||||| |||| | | | |||||||||| | | Sbjct 127907 AATAATCTATCTGCAACAAATTCTATATATTGAGACATAAGTCTAGAATTCATACCTATT 127966 Query 39009 AATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatt 39068 || | | ||||||||| ||| ||||| | |||| | ||||||||||| ||||| Sbjct 127967 AAATCACATGGTAATGATTCACATATAAAAGATCTTTCAACTTCTACAGCTTCTTTAACA 128026 Query 39069 atcataattatattatt--ttttgataattta-tatttaatatgattcgcatataGTAAA 39125 || || || || ||| || || | |||| ||| ||||| | ||| | ||| Sbjct 128027 AT-AT-TTTGTACCATTTGTTCTGGAAGTTTATTATCTAATAAACT----ATAAATTAAG 128080 Query 39126 CATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 39185 || |||||| ||||||| ||||| || ||| ||| |||||||||||||| ||||| Sbjct 128081 CAATTAAAATCTGTATGTAGTCCTTCATCTCTACTTATTAATTCATTACTAAATGTTAAA 128140 Query 39186 CC-TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAA 39244 || || ||| || | | ||||||| |||||| || | ||| |||| | || || Sbjct 128141 CCATGTAATTTATTTTGT-TTTTTAAACCAAAAAATAGCACAAAAGCTACCACTGAATAA 128199 Query 39245 TATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATT--TATCATCT 39302 ||| || || ||||| ||| |||| ||| ||| | ||| || |||| |||||| Sbjct 128200 TATTCCTTCAACACATGCATTAGCTACTATCCTTTCAGCAA--ATGAATTAGTATCAT-- 128255 Query 39303 AAAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCT 39362 |||||| ||| ||||| |||||| ||||| | | ||| |||||||||||||| Sbjct 128256 -TAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACTGCAGGGATATTTTCTATAGCA 128314 Query 39363 TTAAATAA--TTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAT 39420 | |||||| || || | || Sbjct 128315 TGAAATAAATTTAAT--CTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTAT 128372 Query 39421 ACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTG 39480 | |||| ||||| | | ||| | |||||||||||| |||||||||| ||||||||| Sbjct 128373 ATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCTG 128432 Query 39481 AATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATG 39540 ||||| || || ||| | | |||||||| |||| ||||||||| || Sbjct 128433 TTATTTGAACCTCTCTTAAAAATTTACTAGCCAAATTCTCTAATACTATACCATCACTTG 128492 Query 39541 CTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCC 39600 |||| || |||||||| |||| || ||||||||||| ||||| || || || || || Sbjct 128493 CTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTGTCATTCAATTTCTCAA 128552 Query 39601 AAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATT 39660 || || | |||| | |||||||| | ||||||| ||||||||| || ||| | | || Sbjct 128553 AATCTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATGAAGCTTCAGCTT 128612 Query 39661 TTTTATA 39667 | || || Sbjct 128613 TCTTGTA 128619 Score = 86.0 bits (94), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 109114 AATGGATTAAAATATTTACATAAAATAAAAATAGTACATTGTGATTTAAAACCAGAGAAT 109173 |||| | || |||||||||||||||||||||||||||| | |||||||||||||| ||| Sbjct 2038109 AATGCAATAGAATATTTACATAAAATAAAAATAGTACACAGAGATTTAAAACCAGAAAAT 2038168 Query 109174 ATATTAT 109180 || |||| Sbjct 2038169 ATTTTAT 2038175 >seq169 Length=6603 Score = 201 bits (222), Expect = 2e-46 Identities = 183/231 (79%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 || ||||||||| | || ||| ||||| ||||| || | ||||| |||||| ||||| Sbjct 5321 AAAACCACCTCTTAATCTTAACACTAAGTGTAAGGTGGATTCTTTTTGAATATTGTAATC 5380 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 ||||| || || | |||| || |||||||| || ||||| |||||||| ||||||||||| Sbjct 5381 TGATAGAGTTCTTCCGTCCTCTAATTGTTTTCCGGCAAATATTAATCTTTGTTGGTCAGG 5440 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 ||| ||||||||||||||||| ||||| ||| ||||| || || || || | ||| Sbjct 5441 TGGAATTCCTTCTTTATCTTGAATTTTTGCTTTAACATTCTCAATGGTGTCAGATGGTTC 5500 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || |||||||||||||| || ||||||||||||| || || ||||| Sbjct 5501 AACATCGAGAGTAATGGTTTTTCCTGTTAATGTTTTAACAAAAATTTGCAT 5551 Score = 159 bits (176), Expect = 6e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| |||| ||| ||||| ||||| |||| || || ||| || || ||| Sbjct 5550 ATACCACCTCTTAGTCTTAACACTAAGTGTAATGTAGATTCCTTTTGAATGTTGTAGTCT 5609 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | | || || |||||||| |||||||| |||||||| |||||||||||| Sbjct 5610 GATAATGTTCTTCCATCTTCTAATTGTTTTCCAGCAAATATTAATCTTTGTTGGTCAGGT 5669 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||||||||| ||||| |||||||| ||||| || || | || Sbjct 5670 GGAATTCCTTCTTTATCTTGAATTTTTGCCTTTACATTCTCAATAGTGTCAGATGGCTCG 5729 Query 172020 ACTTCTAGAGTAATGGTTTTACC 172042 || || || || || ||||| || Sbjct 5730 ACGTCAAGGGTTATAGTTTTTCC 5752 >seq5 Length=2479031 Score = 181 bits (200), Expect = 2e-40 Identities = 174/223 (78%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 171860 TACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATC 171919 ||| || ||||| |||| || || |||||||||||||||||| | || | | || || Sbjct 2307615 TACCAAGTGTAATGTAGATTCCTTTTGAATATTATAATCTGATAATGTTCTTCCATCTTC 2307674 Query 171920 CAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979 |||||||| |||||||| |||||||| ||||| |||||||| ||||||||||||||||| Sbjct 2307675 TAATTGTTTTCCAGCAAATATTAATCTTTGTTGATCAGGTGGAATTCCTTCTTTATCTTG 2307734 Query 171980 TATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTT 172039 ||||| || ||||| || ||||| || | || || || || ||||| ||||| Sbjct 2307735 AATTTTTGCCTTCACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATTGTTTT 2307794 Query 172040 ACCAGTTAATGTTTTAATGAATATCTGCATTTTATTATAAAAA 172082 |||||||||||||||| || || |||||||| ||| || || Sbjct 2307795 TCCAGTTAATGTTTTAACAAAAATTTGCATTTTCTTAAAATAA 2307837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905126575271400