Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq6 208 2e-48 seq3 134 4e-26 >seq6 Length=2947581 Score = 208 bits (230), Expect = 2e-48 Identities = 780/1215 (64%), Gaps = 16/1215 (1%) Strand=Plus/Plus Query 155311 TTTCCAGAGCCGCAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCT 155370 |||| | ||| ||| | || ||||| ||||| || |||||| | | ||| || | | Sbjct 1353882 TTTCTAAAGCAGCATAGTACATTGTTTCAAATATTCTTTTATTCAATTCTTTTGCAGCAT 1353941 Query 155371 CAGATGTAAATGCGATATCCATCTTGAA-AAATGTGTCGGCTAAACCCTGAACTCCAATA 155429 ||||| | ||| |||||| | | |||||| || ||||| || || || |||||| Sbjct 1353942 CAGATTCATATG-GATATCTTAATAACATAAATGTATCTGCTAATCCTTGTACACCAATA 1354000 Query 155430 CCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGTCTTCTTGTTTGGGTAAAAATTCACA 155489 || | || | || || |||| | ||| || ||| ||||||| |||| Sbjct 1354001 CCAATAGGTCTGTGTCTAGTATTGGATGTTTTTGCCTCTTTGACTGGGTAATAATTTCTT 1354060 Query 155490 TCAATAATGTTATTTAAATTT---GTAACCAATACCTTGGTTACGTCTGCTAATTTCACA 155546 || ||||| |||| ||||||| |||| | | || || | || ||| || | Sbjct 1354061 TCTATAATTTTATCTAAATTTCTGGTAATAATT---TTAGTAATTTCATATAACTTTTTA 1354117 Query 155547 TAGTCAAATG---TTTTATCCTCATTTACAAACATACCAAGACCAATAGACGCCAGATTA 155603 | | |||| |||| ||| || |||||| ||| | | | ||||| |||| |||| Sbjct 1354118 AAATTAAATTCTTTTTTTTCCAAATCTACAAATTTACATAAAGCTATAGATGCCAAATTA 1354177 Query 155604 CATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTC 155663 ||||| ||| || | | | ||||||| ||| ||||| || | |||| || Sbjct 1354178 CATACAGCAACTTCATCAGGGGATGTATATTCTATAATTTCACAACATAAGTTACTACAT 1354237 Query 155664 TTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATG 155723 || || || |||||||| || || ||||||||| ||||||| ||| || |||| || Sbjct 1354238 TTAATAGTACCTAAATTTTTTTGATTAGATTTAGCATTACAAGAATCTTTATATAACATA 1354297 Query 155724 TATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTA 155783 ||||| ||||| || || || | | || | ||| | || | ||| | Sbjct 1354298 TATGGTACACCTGTTTCTATTTGGCTTTGTAATATAGCAAACCATAAATCTTGAGCAAGA 1354357 Query 155784 ATTTGCTTGTTGTATCTGCCTTCCGACT-CATATTTCATATACAGCGTTCGGTAATCCTC 155842 | | | || || | | || | || ||||||| |||| | || | || || Sbjct 1354358 ACT-GTTTTTTTTCCCATATTTTCTTCTTCATATTTAGTATATAATTTTTCAAATTCTTC 1354416 Query 155843 ACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATT 155902 ||| | ||||| | || || || | || || || | || | |||| ||||||| Sbjct 1354417 ACCCCATGTTTCACTTAAACCTGGACATTCATTTGGACACATTAGGGTCCAATTTTTATT 1354476 Query 155903 ACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGC 155962 | | || | || |||||| | |||| |||| | |||||| || | || | ||| Sbjct 1354477 TTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACAGCATAAAATAAATCTCGTGC 1354536 Query 155963 CTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATG 156022 || | || || | || ||||| |||| || ||||| ||||| ||||| | ||| Sbjct 1354537 TCTTAATTCTTCTTTTCCATGATTTTTCCTTAAATCTAAAAATTCAAATATATCTGAATG 1354596 Query 156023 GTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTGCC---ACCCTGATCTACATA 156079 ||| || | ||| | ||||||| || || | || || ||| ||||||||||| Sbjct 1354597 CCATGGTTCAATATAAACAGCAAAAGATCCTTTACGTTTTCCTCCACCTTGATCTACATA 1354656 Query 156080 CCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGT 156139 | ||||| | ||| || || | || |||||| | | |||||| || | |||||||| Sbjct 1354657 TCTTGCAGTGTCATTAAAAACTCTTAACATAGGTACTAAACCATTAGATATTCCATTGGT 1354716 Query 156140 TCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGA 156199 || | ||||| ||| | | | | || | || |||||||| |||| Sbjct 1354717 ACCTCTAATATAAGAATTTTGTCCTCTTATGTCTTGTACTGCTACACCAATACCTCCTGC 1354776 Query 156200 CCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATC 156259 |||| |||| ||| |||| |||| ||| | |||||||||||||||||||| | Sbjct 1354777 AGTTTTACTAATTAAAGCACATTGTTTTAGAGTTTCAAAAATACCTTCAATAGAATCTGC 1354836 Query 156260 TTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAG 156319 || ||| |||| || | || ||| | ||| |||| || || || | || |||| Sbjct 1354837 TTTCATCGATAATAAGAAACAAGAAGACATTTGTGGTCTGGGCGTCCCTGAATTAAATAA 1354896 Query 156320 TGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTT 156379 |||||| |||||||| | ||||| || | |||||| ||| ||||| || | || Sbjct 1354897 TGTAGGAGTTGCATGGGTGAAATATTTCTGAGACATTAAATGATATGTTTCTAGAGCTTT 1354956 Query 156380 CTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTC 156439 || | || | || |||| ||||| || ||||| | | ||| ||||| | || Sbjct 1354957 ATCTATATCATCTATATGTATACCAATAGAAACTCTCATTAATAAATGTTGAGGTCTTTC 1355016 Query 156440 TACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 | ||| || ||| || | | || | | ||||| |||||||| || ||||| Sbjct 1355017 AATAATTTTATTATTAATACGTAATAAATAAGATCTTTCCAAGGTTTTAAATCCAAAATA 1355076 Query 156500 ATCAAACAGAAAATC 156514 |||| | |||||| Sbjct 1355077 ATCATAATTAAAATC 1355091 Score = 136 bits (150), Expect = 1e-26 Identities = 231/335 (69%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 289018 CTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGT 289077 || |||||| || || ||||| ||||| ||||| |||| | ||| || | || || Sbjct 2420053 CTTCTTTTTGATCCTACGGCATCGATTTCATCAATAAAAACAATACATGGTGCATGTTTC 2420112 Query 289078 CTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACA 289137 | ||| | ||| | |||||||| | |||||| | ||||||| |||||||| || Sbjct 2420113 TTTGCAGCTTGAAAAAGTTCTCTTATTCTTCTTGCTCCTACACCAACAAACATTTCTTCA 2420172 Query 289138 AATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCC 289197 ||||| ||| | || |||| | |||| ||||| ||||| ||||| | || || || Sbjct 2420173 AATTCTGAACCTGAGGCTTGTAAAAATGGAACATTAGCTTCTCCTGCAATAGCTCTAGCA 2420232 Query 289198 AGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCC 289257 | | || || || || || ||| ||| ||||| || || ||||||| |||||| Sbjct 2420233 ATTAAAGTTTTTCCAGTACCTGGTTCTCCTGATAATAAAATACCTTTTGGTAATTTTGCA 2420292 Query 289258 CCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATAT 289317 ||| || |||| || | | |||||| | || | ||||| || ||||| | | Sbjct 2420293 CCAATTTTGGTAAATTTATCTGAATTTTTTAAATAATCAATGATTTCTTCTAGTTCTTGT 2420352 Query 289318 TTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 ||| | |||||||||||| ||||| ||||| || Sbjct 2420353 TTTACTTCATCACATCCTTTCACATCTGCAAATGT 2420387 >seq3 Length=1707701 Score = 134 bits (148), Expect = 4e-26 Identities = 337/500 (67%), Gaps = 13/500 (3%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| ||||| | | ||| | ||||| ||||| ||||| |||| || || | Sbjct 603701 CTATCAAATCTACCTGGTCTAGTAATAGCTGGATCTAAAATATCTACTCTATTAGTACCA 603760 Query 288910 GCCAATACAACAA---TAG-ATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTG 288965 || || ||||| | || ||| | | | | |||||||||||| | || ||||| Sbjct 603761 GCTAAAACAACTACCTTATCATTAGATGTA-TGAAATCCATCCATTTCTACTAGCATTTG 603819 Query 288966 ATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACC-CGAATCGCTCCttt 289024 ||| | ||| | ||| ||||||||||| || | | | ||| | | | | |||| Sbjct 603820 ATTTAATGTGTTTTCTCTTTCATCATTACCTCCACCAGCAAAACCACCTTTTGAT-CTTT 603878 Query 289025 ttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAA 289084 || | || |||||||||||||| || || ||||| | | | || | || || ||| || Sbjct 603879 TTCTCCCGACAGCATCAATTTCATCTATAAAAATTATAGAAGGTGCATGTTTTCTTGCTT 603938 Query 289085 TTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAG 289144 ||||||||||||| || | |||| || | ||||||| | | ||| | ||| ||| Sbjct 603939 GAGCAAATAATTCTCGAACCCTTGATGGACCTATACCAACAAAAACTTCAATAAAATCAC 603998 Query 289145 AAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 | || | | || |||| ||||||||||| || ||||| || | || || | | Sbjct 603999 TACCGCTAATATTAAAAAATGGAACATTTGCTTCTCCAGCTACAGCTTTGGCTAGTAAAG 604058 Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCA 289263 | || || || || || | || ||||| | || || |||| ||| || |||| | Sbjct 604059 TTTTTCCAGTACCTGGAGCACCACATAATAATGCACCTTTAGGTATTTTAGCACCCA--A 604116 Query 289264 GACTT-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGC 289322 | || |||||| || | |||||||| ||||||| |||| || ||| | ||| || Sbjct 604117 TATTTCATATTTGGTTGGATTTTTTAAAAAATCTACAAATTCCATAATTTCTTCTTTAGC 604176 Query 289323 CT-CATCACATCCTGCTACA 289341 | | ||| | || |||||| Sbjct 604177 TTGCTTCATA-CCAGCTACA 604195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471801891566721