Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq169 145 7e-30 seq5 138 1e-27 seq6 84.2 2e-11 >seq169 Length=6603 Score = 145 bits (160), Expect = 7e-30 Identities = 165/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| ||||||| |||| || ||||| ||||| ||||| || ||| | | Sbjct 5551 ATGCAAATTTTTGTTAAAACATTAACAGGAAAAACCATTACTCTCGATGTTGAACCATCT 5492 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || || | |||| ||||| || ||||| ||||||||||| || || || || Sbjct 5491 GACACCATTGAGAATGTTAAAGCAAAA-ATTCAAGATAAAGAAGGAATTCCACCTGACCA 5433 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | || || |||||||| ||||| | ||||| |||| | |||||||| || Sbjct 5432 ACAAAGATTAATATTTGCCGGAAAACAATTAGAGGACGGAAGAACTCTATCAGATTACAA 5373 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATT 24921 |||||||| ||||| || ||||||| ||||| |||| Sbjct 5372 TATTCAAAAAGAATCCACCTTACACTTAGTGTTAAGATT 5334 Score = 116 bits (128), Expect = 3e-21 Identities = 139/186 (75%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 24731 GGTAAAACTATTACGCTCGAAGTAGAAGCCACC-GACACAGTAGAAACGGTAAAACAAAA 24789 || |||||||| || || || || || |||| | ||||| | || | ||||| ||| Sbjct 5752 GGAAAAACTATAACCCTTGACGTCGA-GCCATCTGACACTATTGAGAATGTAAAGGCAAA 5694 Query 24790 GATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACA 24849 || ||||| ||||||||||| || || || |||||| | || || ||||| || ||||| Sbjct 5693 AATTCAAGATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATTTGCTGGAAAACA 5634 Query 24850 GCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTT 24909 | || ||| |||| | ||||| || ||||||||||||||||| ||| ||||||| Sbjct 5633 ATTAGAAGATGGAAGAACATTATCAGACTACAACATTCAAAAGGAATCTACATTACACTT 5574 Query 24910 GGTGTT 24915 ||||| Sbjct 5573 AGTGTT 5568 >seq5 Length=2479031 Score = 138 bits (152), Expect = 1e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| ||||||| |||| || ||||| ||||| || || || || |||| | Sbjct 2307824 ATGCAAATTTTTGTTAAAACATTAACTGGAAAAACAATTACCCTTGATGTTGA-GCCATC 2307766 Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || | || || ||| || ||||| ||||||||||| || || ||||| Sbjct 2307765 TGATACGATTGAGAATGTGAAGGCAAAAATTCAAGATAAAGAAGGAATTCCACCTGATCA 2307706 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | || || ||||| || ||||| | || ||| |||| | ||||||||||| Sbjct 2307705 ACAAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGAACATTATCAGATTATAA 2307646 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 |||||||||||||| ||| |||||||||| Sbjct 2307645 TATTCAAAAGGAATCTACATTACACTTGGT 2307616 >seq6 Length=2947581 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 139093 TTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTA 139152 || || || || ||||| || ||| | ||||| | |||||| ||| || |||||| Sbjct 1354175 TTACATACAGCAACTTCATCAGGGGATGTATATTCTATAATTTCACAACATAAGTTACTA 1354234 Query 139153 CACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGC 139212 || || || ||||||||||||| |||||| ||| ||||||| |||||| || | | Sbjct 1354235 CATTTAATAGTACCTAAATTTTTTTGATTAGATTTAGCATTACAAGAATCTTTATATAAC 1354294 Query 139213 ATATACGGTGTGCCAGTTTCCACTTG 139238 ||||| ||| || ||||| | ||| Sbjct 1354295 ATATATGGTACACCTGTTTCTATTTG 1354320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449892915441240