Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq169 104 2e-17 seq5 104 2e-17 >seq169 Length=6603 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| ||||| ||||| || ||||||||||| |||| || || Sbjct 5551 ATGCAAATTTTTGTTAAAACATTAACAGGAAAAACCATTACTCTCGATGTTGAACCATCT 5492 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || ||| || ||| || |||||||| | || || ||| Sbjct 5491 GACACCATTGAGAATGTTAAAGCAAAAATTCAAGATAAAGAAGGAATTCCACCTGACCAA 5432 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | || | ||| || ||||| | ||||| | ||||| | | |||||||| Sbjct 5431 CAAAGATTAATATTTGCCGGAAAACAATTAGAGGACGGAAGAACTCTATCAGATTACAAT 5372 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||||||||| || || ||| | ||||||||| | |||| || Sbjct 5371 ATTCAAAAAGAATCCACCTTACACTTAGTGTTAAGATTAAGAGGTGG 5325 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 || |||||||| | || || ||||||||| | || | ||| || ||||| | || Sbjct 5686 GATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATTTGCTGGAAAACAATTAGAA 5627 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| |||||| | | || |||||||||||||| |||||||| || ||| | |||||| Sbjct 5626 GATGGAAGAACATTATCAGACTACAACATTCAAAAGGAATCTACATTACACTTAGTGTTA 5567 Query 110486 AGACTGCGAGGGGG 110499 ||||| |||| || Sbjct 5566 AGACTAAGAGGTGG 5553 >seq5 Length=2479031 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 ||||||||||| ||||| ||||| ||||| || ||||| |||||| | || ||||| Sbjct 2307827 AAAATGCAAATTTTTGTTAAAACATTAACTGGAAAAACAATTACCCTTGATGTTGAGCCA 2307768 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||||| | | | || || || ||| || |||||||| | || ||| Sbjct 2307767 TCTGATACGATTGAGAATGTGAAGGCAAAAATTCAAGATAAAGAAGGAATTCCACCTGAT 2307708 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||||||| | || | ||| || ||||| | || |||| |||||| | | ||||| Sbjct 2307707 CAACAAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGAACATTATCAGATTAT 2307648 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGT 110481 || |||||||| |||||||| || ||| |||| Sbjct 2307647 AATATTCAAAAGGAATCTACATTACACTTGGT 2307616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412837408754669