Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq169 187 4e-42 seq5 170 3e-37 >seq169 Length=6603 Score = 187 bits (206), Expect = 4e-42 Identities = 184/238 (77%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | |||||||||||||||||||| |||||| | ||||| |||| | Sbjct 5550 TGCAAATTTTTGTTAAAACATTAACAGGAAAAACCATTACTCTCGATGTTGAACCATCTG 5491 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| ||| ||||| ||| ||||||||| |||||||| || |||| Sbjct 5490 ACACCATTGAGAATGTTAAAGCAAAAATTCAAGATAAAGAAGGAATTCCACCTGACCAAC 5431 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || ||||| || ||||||||||| || ||||| || ||||||| |||| Sbjct 5430 AAAGATTAATATTTGCCGGAAAACAATTAGAGGACGGAAGAACTCTATCAGATTACAATA 5371 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 | ||||||||||| || | || ||||| ||| |||||||||| ||| ||| |||| Sbjct 5370 TTCAAAAAGAATCCACCTTACACTTAGTGTTAAGATTAAGAGGTGGTTTTTAATTATT 5313 Score = 141 bits (156), Expect = 1e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 146057 AGGAAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAAATGTAAAAAATAA 146116 ||||||||| || || |||| || || | || |||||| | |||||||| || Sbjct 5753 AGGAAAAACTATAACCCTTGACGTCGAGCCATCTGACACTATTGAGAATGTAAAGGCAAA 5694 Query 146117 AATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACA 146176 ||| ||| ||||||||| |||||||| || ||||||||| | || ||||| || ||||| Sbjct 5693 AATTCAAGATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATTTGCTGGAAAACA 5634 Query 146177 ATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTT 146236 |||||| ||| ||||| ||| |||| || || || ||||| ||||| || | || || Sbjct 5633 ATTAGAAGATGGAAGAACATTATCAGACTACAACATTCAAAAGGAATCTACATTACACTT 5574 Query 146237 AGTATTACGATTAAGAGGAGGTA 146259 ||| ||| || ||||||| |||| Sbjct 5573 AGTGTTAAGACTAAGAGGTGGTA 5551 >seq5 Length=2479031 Score = 170 bits (188), Expect = 3e-37 Identities = 163/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||||||||| |||||||||||||| ||||||| || | | Sbjct 2307823 TGCAAATTTTTGTTAAAACATTAACTGGAAAAACAATTACCCTTGATGTTGAGCCATCTG 2307764 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| || ||||| ||| ||||||||| |||||||| ||||||| Sbjct 2307763 ATACGATTGAGAATGTGAAGGCAAAAATTCAAGATAAAGAAGGAATTCCACCTGATCAAC 2307704 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || ||||| || ||||||||||| ||| ||||| ||| |||||||||||| Sbjct 2307703 AAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGAACATTATCAGATTATAATA 2307644 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTA 146240 | ||||| ||||| || | || || ||| Sbjct 2307643 TTCAAAAGGAATCTACATTACACTTGGTA 2307615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786158214042360