Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq5 147 2e-30 seq169 140 2e-28 >seq5 Length=2479031 Score = 147 bits (162), Expect = 2e-30 Identities = 162/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 ||||| || | || ||||| |||||||| |||||||| | | || | ||| || Sbjct 2307616 ACCAAGTGTAATGTAGATTCCTTTTGAATATTATAATCTGATAATGTTCTTCCATCTTCT 2307675 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | |||||| |||||| |||| |||||||| ||||| || ||||| || ||||| ||||| Sbjct 2307676 AATTGTTTTCCAGCAAATATTAATCTTTGTTGATCAGGTGGAATTCCTTCTTTATCTTG- 2307734 Query 29698 AATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 |||||||| || ||| | || | || ||||| | || || ||||| || || ||||| Sbjct 2307735 AATTTTTGCCTTCACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATTGTTTT 2307794 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 |||||||| ||||||||||| || |||||||| Sbjct 2307795 TCCAGTTAATGTTTTAACAAAAATTTGCATTTT 2307827 >seq169 Length=6603 Score = 140 bits (154), Expect = 2e-28 Identities = 159/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 29577 CACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATC 29636 ||| || || | ||||||||||||||||| || ||||| | | || | || || Sbjct 5342 CACTAAGTGTAAGGTGGATTCTTTTTGAATATTGTAATCTGATAGAGTTCTTCCGTCCTC 5401 Query 29637 GAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTG 29696 | |||||| || ||| |||| |||||||| || || || ||||| || ||||| ||||| Sbjct 5402 TAATTGTTTTCCGGCAAATATTAATCTTTGTTGGTCAGGTGGAATTCCTTCTTTATCTTG 5461 Query 29697 TAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTT 29755 |||||||| ||| ||| | || | |||||||| |||| || || ||||| || |||| Sbjct 5462 -AATTTTTGCTTTAACATTCTCAATGGTGTCAGATGGTTCAACATCGAGAGTAATGGTTT 5520 Query 29756 TGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || ||||| ||||||||||| || ||||| Sbjct 5521 TTCCTGTTAATGTTTTAACAAAAATTTGCAT 5551 Score = 114 bits (126), Expect = 1e-20 Identities = 142/191 (74%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 29577 CACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATC 29636 ||| || || | || ||||| ||||||||||| || || | | || | ||| || Sbjct 5570 CACTAAGTGTAATGTAGATTCCTTTTGAATGTTGTAGTCTGATAATGTTCTTCCATCTTC 5629 Query 29637 GAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTG 29696 | |||||| |||||| |||| |||||||| || || || ||||| || ||||| ||||| Sbjct 5630 TAATTGTTTTCCAGCAAATATTAATCTTTGTTGGTCAGGTGGAATTCCTTCTTTATCTTG 5689 Query 29697 TAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTT 29755 |||||||| || ||| | || | ||||||||| | || || ||||| |||||||||| Sbjct 5690 -AATTTTTGCCTTTACATTCTCAATAGTGTCAGATGGCTCGACGTCAAGGGTTATAGTTT 5748 Query 29756 TGCCAGTTAAG 29766 | || ||||| Sbjct 5749 TTCC--TTAAG 5757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385215289182453