Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq9 134 2e-26 seq7 116 5e-21 seq4 84.2 3e-11 >seq9 Length=776283 Score = 134 bits (148), Expect = 2e-26 Identities = 314/468 (67%), Gaps = 23/468 (5%) Strand=Plus/Plus Query 168657 GATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATATATTGAC-TG 168715 |||||||| || |||||||| ||||||||||||||| |||||| |||||| | || Sbjct 511693 GATTTAGGACCTATTTATGGTTTTCAATGGAGACATTTCGGAGCTGAATATACAAATATG 511752 Query 168716 --TGATACAGATTACACCGGACAAGGAGTAGACCAATTAAGTCAAACTATAAATACTTTA 168773 ||||| || | | |||| || || ||||||| ||| ||||| | |||| Sbjct 511753 CATGATAATTATGAAAATA---AAGGTGTTGATCAATTAA---AAAATATAATAAATTTA 511806 Query 168774 CACAACAAT---CCGGAAAATAGAAGAATATTAATTAATAGTTGGGATGTACCACAACTT 168830 || ||| || || ||||||||| | | | ||| ||||| | | ||| Sbjct 511807 ATTAAAAATGATCCTACAAGTAGAAGAATTCTTTTGTGTGCATGGAATGTAAAAGATCTT 511866 Query 168831 GATAAAATGGTTCTTCCCCCTTGTCACACTTTAGTGCAATTTTATGTA----AGGAAAAA 168886 || |||||| | || |||||||| | |||| ||||||||||| | | |||| Sbjct 511867 GACCAAATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTCGATGGAAAA 511926 Query 168887 ATCAATCTTAGATTGTCAGTTGTATCAAAGATCAGCTGATTTAGGATTAGGAGTACCTTA 168946 | ||| | ||| | ||||||||| ||| |||||||||| |||||||||||| Sbjct 511927 TT--ATCATGTATTAT-----GTATCAAAGGTCATGTGATTTAGGACTAGGAGTACCTTT 511979 Query 168947 TAATATTGGATTTTATTCATTTTTAACACTTGTGCTAAGTAAATGGTGTAATTTGACGCC 169006 |||||||| | |||||| |||| || | | || | || ||||||||| || Sbjct 511980 TAATATTGCTTCTTATTCTATTTTTACTCATATGATTGCACAAGTCTGTAATTTGCAACC 512039 Query 169007 TGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAACCATGTTGAACCTTT 169066 || | ||||| || ||| ||| ||| || || ||| || || | || ||| Sbjct 512040 TGCCGAATTTATACACGTTTTAGGAAATGCGCATGTTTATAATAATCACATCGATAGTTT 512099 Query 169067 AAAGGTTCAATTGAAAAGAAAACCATATTCTTTTCCAAATGTTAAATT 169114 ||| ||||| | || |||| ||||||| | || |||| ||||||| Sbjct 512100 AAAAATTCAACTTAATAGAATACCATATCCATTCCCAACACTTAAATT 512147 >seq7 Length=694560 Score = 116 bits (128), Expect = 5e-21 Identities = 152/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 193791 AAAATTTTTATAGGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGATAAAATG 193850 ||||||||||| || ||||| |||||||| | | |||||||||||| | |||||||| Sbjct 516956 AAAATTTTTATTGGACCAACATATTATCAAAGATTAAAACATATGGTTGAAGATAAAATA 517015 Query 193851 CATGCTAGAAGTCATGGACAAGTGACTA-CTTTACATCGACAACCAAATTGTGGTCGTTC 193909 ||||| |||||| |||| | | |||| ||||| ||||||||| || | || Sbjct 517016 CATGCAAGAAGTAGAGGACCATTAACTATGATTACA-AGACAACCAACAGAAGGAAGATC 517074 Query 193910 TCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAGACTGTATTTTAGTTCATGGTGC 193969 || ||| ||| ||||||||||||||||||| | ||| ||||| || ||||| | Sbjct 517075 AAGAGATGGTGGTCTAAGATTTGGAGAAATGGAAAGAGATTGTATGATATCACATGGATC 517134 Query 193970 TACTCAATTCTTGAATGAAAGAATGTTT 193997 | | || | || || |||||| | ||| Sbjct 517135 TGCCAAAATGTTAAAAGAAAGATTATTT 517162 Score = 102 bits (112), Expect = 1e-16 Identities = 161/226 (71%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 192930 GAAACAGTATCTCATACATTAAATTATCCACAAAAACCCCTTGT---TACCACAGATATT 192986 || ||| || ||||| |||| |||| ||||||||||| | || ||| | | ||| Sbjct 515684 GATACATTAGCTCATTTATTATATTACCCACAAAAACCATTAGTATGTACAAAGGCTATG 515743 Query 192987 GCAAAATTTAATAAATTAGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCT 193046 | || ||||| ||||| | | ||| |||||||||||| ||||| ||||| Sbjct 515744 G-AATATTTACGTT-TTAGAGAACTC-CCAGCTGGTATTAATGCAATTGTAGCTATTATG 515800 Query 193047 TGCTATACTGGTTATAATCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGA 193106 || ||||| ||||||||||||||||| ||| | ||| | || || | |||||||| | Sbjct 515801 TGTTATACAGGTTATAATCAAGAAGATAGTTTGATTATGAACCAATCATCTATTGATCGT 515860 Query 193107 GGATTATTTGGTACTATAACTTATAATACATATACAGTTGAAGAAA 193152 || |||||| | | | || |||| ||| ||||| |||||||| Sbjct 515861 GGTTTATTTAGAAGTGTATTTTATCGTACTTATACTAGTGAAGAAA 515906 >seq4 Length=1854454 Score = 84.2 bits (92), Expect = 3e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 193758 TATTGTGGGTTTACTGGTAAAAGAATTGAAAATAAAATTTTTATAGGGCCAACTTATTAT 193817 |||| ||| || || ||| || | |||| | || ||||| || |||| |||||| Sbjct 211359 TATTCTGGATTAACAGGTGAACCTTTAGAAACATATATATTTATGGGACCAATATATTAT 211300 Query 193818 CATCGTCTTAAACATATGGTTAAGGATAAAATGCATGCTAGAAGTCATGGA-CAAGTGAC 193876 || | ||||||||||| | |||||||| ||||||||| | ||| |||| | Sbjct 211299 CAAAAATTAAAACATATGGTACAAGATAAAATCCATGCTAGAGCTAGAGGACCAAGACAA 211240 Query 193877 TACTTTACATCGACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGA 193936 | | ||| ||||||||| | ||| | || ||| |||||||||||||| || || Sbjct 211239 TTACTCACA-AGACAACCAACTGAAGGTAGATCAAAAGAAGGAGGTTTAAGATTAGGTGA 211181 Query 193937 AATGGAGAAAGACTGTATTTTAGTTCATGGTGCTA 193971 |||||| | ||| ||| | ||| |||||| || Sbjct 211180 AATGGAAAGAGATTGTTTAATAGCATATGGTGTTA 211146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635170986213240