Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq7 118 1e-21 seq9 113 6e-20 >seq7 Length=694560 Score = 118 bits (130), Expect = 1e-21 Identities = 164/225 (73%), Gaps = 5/225 (2%) Strand=Plus/Plus Query 201904 GAAAAAT-TCAAAGT--AAAATTTTTATAGGCCCAACATACTATCATCGTCTTAAACATA 201960 ||| ||| | ||||| ||||||||||| || |||||||| ||||| | | ||||||| Sbjct 516939 GAAGAATGTTAAAGTCCAAAATTTTTATTGGACCAACATATTATCAAAGATTAAAACATA 516998 Query 201961 TGGTTAAGGATAAAATGCATGCGAGAAGTCATGGTCAAGTAAC-AACATTACATCGTCAA 202019 ||||| | |||||||| ||||| |||||| || | | |||| | |||||| | ||| Sbjct 516999 TGGTTGAAGATAAAATACATGCAAGAAGTAGAGGACCATTAACTATGATTACA-AGACAA 517057 Query 202020 CCAAACTGTGGTCGGTCCCAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTGT 202079 |||| || | || || |||||| ||||||||||||||||||||| ||||||| Sbjct 517058 CCAACAGAAGGAAGATCAAGAGATGGTGGTCTAAGATTTGGAGAAATGGAAAGAGATTGT 517117 Query 202080 ATTTTGGTTCATGGGGCCACACAATTTTTAAATGAAAGAATGTTT 202124 || | ||||| | | || | ||||| |||||| | ||| Sbjct 517118 ATGATATCACATGGATCTGCCAAAATGTTAAAAGAAAGATTATTT 517162 Score = 96.9 bits (106), Expect = 5e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 201146 TGGTATTAATGCAATTGTAGCAATTGCATGTTACACTGGATACAATCAAGAAGATAGTGT 201205 ||||||||||||||||||||| ||| ||||| || || || ||||||||||||||| | Sbjct 515773 TGGTATTAATGCAATTGTAGCTATTATGTGTTATACAGGTTATAATCAAGAAGATAGTTT 515832 Query 201206 TATTCTTAATAAAGCATCTATTGAAAGAGGTTTATTCGGTACCACAACTTATAATACTTT 201265 ||| | || || |||||||||| | |||||||| | | | |||| ||||| Sbjct 515833 GATTATGAACCAATCATCTATTGATCGTGGTTTATTTAGAAGTGTATTTTATCGTACTTA 515892 Query 201266 TACAGCTGAAGAAACAAAAAATGGTA 201291 ||| |||||||| | || | |||| Sbjct 515893 TACTAGTGAAGAAAAACAACAAGGTA 515918 >seq9 Length=776283 Score = 113 bits (124), Expect = 6e-20 Identities = 422/642 (66%), Gaps = 41/642 (6%) Strand=Plus/Plus Query 180357 AATTTGATTTAAGTGAAGGAATTGTACCACTTCTTACAACaaaaaaaaTAGTTTATAAAA 180416 |||||||||||||| || ||| | ||| | | || ||||| ||| || | | | | Sbjct 511496 AATTTGATTTAAGTCAAT--ATT-TCCCATTATTAACTACAAAGAAATTATTCTTAAGAG 511552 Query 180417 ATATTCTTAAAGAATTATTATGGATAATGAAAGGTTTAACAAATTCTAATT---TGTTAA 180473 ||| || ||||||| | ||| | || | ||| ||||||| |||| |||||| Sbjct 511553 GAATTATTGAAGAATTGCTTTGGTTTATTAGAGGAGAAACAAATGGTAATACGCTGTTAA 511612 Query 180474 ATGATATTGGTGTTAAAG-TGTGGAATGATAATGGTTCGCGTAAGTTTTTAGATTCTTGT 180532 || | | || ||| | | ||| | | ||||||| | | | ||||||||| | | Sbjct 511613 ATAAGAATG----TAAGGATATGGGAAGCTAATGGTACTAGGGAATTTTTAGATAATAGA 511668 Query 180533 GGATTTCATTTTCGAAAAGAAGGT---GATTTAGGACCAATTTATGGATTTCAATGGAGA 180589 ||| |||| | ||||| | ||||||||||| |||||||| |||||||||||| Sbjct 511669 AAATTA---TTTCATAGAGAAGTTAACGATTTAGGACCTATTTATGGTTTTCAATGGAGA 511725 Query 180590 CATGCAGGAGCTCAATATATTGACTGTG-ATACCAACTATATCGGGCAAGGTATAGACCA 180648 ||| |||||| |||||| | | || || || ||| ||||| | || || Sbjct 511726 CATTTCGGAGCTGAATATA-CAAATATGCATGATAATTATGAAAATAAAGGTGTTGATCA 511784 Query 180649 ATTAAGCCAAGTTATAGAAACT---ATAAAAAATAATCCCGAATGCCGAAGAATAATCAT 180705 ||||| || |||| || | || |||||| |||| | | ||||||| | | Sbjct 511785 ATTAA---AAAATATAATAAATTTAATTAAAAATGATCCTACAAGTAGAAGAATTCTTTT 511841 Query 180706 AGATAGTTGGAATGTATCACA--ATTACCAGATATGGCTCTTCCACCATGTCACTGTTTG 180763 | ||||||||| | | | ||| | ||||| | || || ||||| ||| Sbjct 511842 GTGTGCATGGAATGTAAAAGATCTTGACC--AAATGGCATTACCTCCTTGTCATATTTTA 511899 Query 180764 GTACAATTTTATG--TTAGAAATAAAATTTATTTAGATTGCCAATTGTATCAAAGATCTG 180821 |||||||||| || || |||||| | ||| |||||||||| || Sbjct 511900 TGTCAATTTTATGTTTTCGATGGAAAATTATCATGTATT-----ATGTATCAAAGGTCAT 511954 Query 180822 CAGATTTAGGATTAGGTGTACCATATAATATTGCTTTCTATTC-ATTTTTGGT-ATGTGT 180879 ||||||||| |||| ||||| | ||||||||||| ||||| |||||| | || || Sbjct 511955 GTGATTTAGGACTAGGAGTACCTTTTAATATTGCTTCTTATTCTATTTTTACTCATATGA 512014 Query 180880 TCTCTCAAAGTGGTGCAATTTAACCCCTGGAAAATTTATTCACACTTTTGGGGATGTTCA 180939 | | | |||| || ||||| |||| ||||||| ||| ||| || ||| || Sbjct 512015 TTGCAC-AAGT-CTGTAATTTGCAACCTGCCGAATTTATACACGTTTTAGGAAATGCGCA 512072 Query 180940 TGTATATTCTAACCATATTGACCAATTAAAAATTCAA-TTAA 180980 ||| ||| ||| || || || |||||||||||| |||| Sbjct 512073 TGTTTATAATAATCACATCGATAGTTTAAAAATTCAACTTAA 512114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655273176897000