Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq7 111 2e-19 >seq7 Length=694560 Score = 111 bits (122), Expect = 2e-19 Identities = 151/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 193344 AAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAATG 193403 ||||||||||| || ||||| ||||| || | | ||||| |||||| | |||||||| Sbjct 516956 AAAATTTTTATTGGACCAACATATTATCAAAGATTAAAACATATGGTTGAAGATAAAATA 517015 Query 193404 CATGCTAGAAGTCATGGGCAAGTGACTA-CTTTACATCGACAACCAAATTGTGGTCGTTC 193462 ||||| |||||| || | | | |||| ||||| ||||||||| || | || Sbjct 517016 CATGCAAGAAGTAGAGGACCATTAACTATGATTACA-AGACAACCAACAGAAGGAAGATC 517074 Query 193463 TCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTGC 193522 || ||| ||| ||||||||||||||||||||| ||| ||||| || ||||| | Sbjct 517075 AAGAGATGGTGGTCTAAGATTTGGAGAAATGGAAAGAGATTGTATGATATCACATGGATC 517134 Query 193523 TACTCAATTCTTAAATGAAAGAATGTTT 193550 | | || | ||||| |||||| | ||| Sbjct 517135 TGCCAAAATGTTAAAAGAAAGATTATTT 517162 Score = 93.3 bits (102), Expect = 5e-14 Identities = 153/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 192493 CTCATACATTAAATTATCCACAAAAACCACTTGT---TACCACAGATATTGCAAAATTTA 192549 ||||| |||| |||| |||||||||||| | || ||| | | ||| | || ||||| Sbjct 515694 CTCATTTATTATATTACCCACAAAAACCATTAGTATGTACAAAGGCTATGG-AATATTTA 515752 Query 192550 ATAAATTAGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTG 192609 ||||| | | ||| |||||||||||| ||||| ||||| || ||||| | Sbjct 515753 CGTT-TTAGAGAACTC-CCAGCTGGTATTAATGCAATTGTAGCTATTATGTGTTATACAG 515810 Query 192610 GCTATAACCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGATTATTTG 192669 | ||||| |||||||| ||| | ||| | || || | |||||||| | || |||||| Sbjct 515811 GTTATAATCAAGAAGATAGTTTGATTATGAACCAATCATCTATTGATCGTGGTTTATTTA 515870 Query 192670 GCACTATAACTTATAATACATATACAGTTGAAGAAA 192705 | | | || |||| ||| ||||| |||||||| Sbjct 515871 GAAGTGTATTTTATCGTACTTATACTAGTGAAGAAA 515906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628524655418880