Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq169 190 4e-43 seq5 181 2e-40 >seq169 Length=6603 Score = 190 bits (210), Expect = 4e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| ||||| || | | |||||||| | || |||||||| || ||||| ||||| || Sbjct 5324 ACCACCTCTTAATCTTAACACTAAGTGTAAGGTGGATTCTTTTTGAATATTGTAATCTGA 5383 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 |||| |||| ||||| |||| ||||||||| ||||| |||| ||||||||| || || || Sbjct 5384 TAGAGTTCTTCCGTCCTCTAATTGTTTTCCGGCAAATATTAATCTTTGTTGGTCAGGTGG 5443 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 |||||||| ||||||||||| |||||||| ||||| ||||| || ||| ||||| || Sbjct 5444 AATTCCTTCTTTATCTTGAATTTTTGCTTTAACATTCTCAATGGTGTCAGATGGTTCAAC 5503 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || || || ||||| || || || ||||| || ||||| Sbjct 5504 ATCGAGAGTAATGGTTTTTCCTGTTAATGTTTTAACAAAAATTTGCAT 5551 Score = 150 bits (166), Expect = 4e-31 Identities = 143/183 (78%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 |||||||| | |||||||| || || || || || || |||| |||| || |||||| Sbjct 5571 ACTAAGTGTAATGTAGATTCCTTTTGAATGTTGTAGTCTGATAATGTTCTTCCATCTTCT 5630 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 | ||||||||||||||| |||| ||||||||| || || || |||||||| ||||||||| Sbjct 5631 AATTGTTTTCCAGCAAATATTAATCTTTGTTGGTCAGGTGGAATTCCTTCTTTATCTTGA 5690 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 || ||||| |||||||| ||||| || ||| || || || || | ||||| || || Sbjct 5691 ATTTTTGCCTTTACATTCTCAATAGTGTCAGATGGCTCGACGTCAAGGGTTATAGTTTTT 5750 Query 82782 CCT 82784 ||| Sbjct 5751 CCT 5753 >seq5 Length=2479031 Score = 181 bits (200), Expect = 2e-40 Identities = 166/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 || ||||| | |||||||| || || ||||||||||| |||| |||| || |||||| Sbjct 2307616 ACCAAGTGTAATGTAGATTCCTTTTGAATATTATAATCTGATAATGTTCTTCCATCTTCT 2307675 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 | ||||||||||||||| |||| |||||||||||| || || |||||||| ||||||||| Sbjct 2307676 AATTGTTTTCCAGCAAATATTAATCTTTGTTGATCAGGTGGAATTCCTTCTTTATCTTGA 2307735 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 || ||||| || ||||| |||||||||||| || || || || | || || || || Sbjct 2307736 ATTTTTGCCTTCACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATTGTTTTT 2307795 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || || || ||||| || |||||| Sbjct 2307796 CCAGTTAATGTTTTAACAAAAATTTGCATT 2307825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981816721142387