Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq5 98.7 2e-15 seq169 87.8 3e-12 >seq5 Length=2479031 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/136 (75%), Gaps = 11/136 (8%) Strand=Plus/Plus Query 81647 GTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA---------- 81696 ||| ||||||| || ||||||||||| |||| ||||| | |||||||| Sbjct 2307628 GTAGATTCCTTTTGAATATTATAATCTGATAATGTTCTTCCATCTTCTAATTGTTTTCCA 2307687 Query 81697 -CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTT 81755 |||| |||| |||||||||| | || | ||| |||| ||||||||||| ||||| || Sbjct 2307688 GCAAATATTAATCTTTGTTGATCAGGTGGAATTCCTTCTTTATCTTGAATTTTTGCCTTC 2307747 Query 81756 ATATTTTCAATCGTAT 81771 | ||| |||||||||| Sbjct 2307748 ACATTCTCAATCGTAT 2307763 >seq169 Length=6603 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/130 (74%), Gaps = 11/130 (8%) Strand=Plus/Plus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 |||| || || ||||| ||||| ||||||||||| | ||| ||||| ||| Sbjct 5359 ATTCTTTTTGAATATTGTAATCTGATAGAGTTCTTCCGTCCTCTAATTGTTTTCCGGCAA 5418 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 | |||| ||||||||| | || | ||| |||| ||||||||||| |||||||| | || Sbjct 5419 ATATTAATCTTTGTTGGTCAGGTGGAATTCCTTCTTTATCTTGAATTTTTGCTTTAACAT 5478 Query 81760 TTTCAATCGT 81769 | ||||| || Sbjct 5479 TCTCAATGGT 5488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903401793230880