Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq6 311 2e-79 seq9 123 6e-23 seq5 107 5e-18 seq8 100 7e-16 seq13 95.1 3e-14 >seq6 Length=2947581 Score = 311 bits (344), Expect = 2e-79 Identities = 622/914 (68%), Gaps = 31/914 (3%) Strand=Plus/Minus Query 110263 TAAATAATATTATCGATTATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTC 110322 ||||||| || ||||||||| | || | | || ||| |||||||| || ||||| Sbjct 1355117 TAAATAAAGAAATAGATTATACTAGGGATTTTAATTATGATTATTTTGGATTTAAAACCT 1355058 Query 110323 TTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGT 110382 | ||| | |||||||| | ||| | ||| | || |||||| | |||||||| | | Sbjct 1355057 TGGAAAGATCTTATTTATTACGTATTAATAATAAAATTATTGAAAGACCTCAACATTTAT 1354998 Query 110383 TTCTTCGTGTTGCGATTGGTATTCATGGACATGATAT---TAAAGCTGTTATTGAATGTT 110439 | | | ||| | |||||||| ||| | ||||||| ||||||| | ||| | Sbjct 1354997 TAATGAGAGTTTCTATTGGTATACATATAGATGATATAGATAAAGCTCTA---GAAACAT 1354941 Query 110440 ATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCTATTTAACGCAGGAA 110499 || || || | | | || | | ||||| |||||||| ||||||| |||| | Sbjct 1354940 ATCATTTAATGTCTCAGAAATATTTCACCCATGCAACTCCTACATTATTTAATTCAGGGA 1354881 Query 110500 CTAATGGAGGACAATTGGCTTCTTGCTTTCTTCT-AGGAATTAACGATGATTCTATTGAA 110558 | || |||| || ||||||| |||||| | | || || | |||||||||||| Sbjct 1354880 CGCCCAGACCACAAATGTCTTCTTG-TTTCTTATTATCGATGAAAGCAGATTCTATTGAA 1354822 Query 110559 GGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGT 110618 ||||||| ||| |||| ||| || |||| | ||| ||||| | ||||| |||||| Sbjct 1354821 GGTATTTTTGAAACTCTAAAACAATGTGCTTTAATTAGTAAAACTGCAGGAGGTATTGGT 1354762 Query 110619 ATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCA----ACAG---CGAAGGG 110671 | || || || || || |||| |||| || | | || | || || Sbjct 1354761 GTAGCAGTACAAGACAT------AAGAGGACAAAAT-TCTTATATTAGAGGTACCAATGG 1354709 Query 110672 TGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAA 110731 || | ||| | || || ||||||||||| || || |||||||||| |||||| | Sbjct 1354708 AATATCTAATGGTTTAGTACCTATGTTAAGAGTTTTTAATGACACTGCAAGATATGTAGA 1354649 Query 110732 TCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGA 110788 ||||||||| || | || || || |||||| | ||| | ||||| ||||||||||| Sbjct 1354648 TCAAGGTGGAGGAAAACGTAAAGGATCTTTTGCTGTTTATATTGAACCATGGCATTCAGA 1354589 Query 110789 TATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGA 110848 |||||||||||| ||||| | | |||||||| ||| |||||| ||||||||| || Sbjct 1354588 TATATTTGAATTTTTAGATTTAAGGAAAAATCATGGAAAAGAAGAATTAAGAGCACGAGA 1354529 Query 110849 TTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCAT 110908 |||||||||||| | ||| || | ||| | || ||||| | ||| |||||||| | Sbjct 1354528 TTTATTTTATGCTGTATGGGTTCCTGATCTTTTTATGAAGAGAGTTAAAGAAAATAAAAA 1354469 Query 110909 GTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTT 110968 ||| | || |||||||| || | ||| ||| || ||| || || |||| || Sbjct 1354468 TTGGACCCTAATGTGTCCAAATGAATGTCCAGGTTTAAGTGAAACATGGGGTGAAGAATT 1354409 Query 110969 TGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAA---TTCCAGC 111025 |||| | | || ||||||||| ||||| || | | ||| ||| ||| || Sbjct 1354408 TGAAAAATTATATACTAAATATGAAGAAGAA---AATATGGGAAAAAAAACAGTTCTTGC 1354352 Query 111026 TCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTT 111085 |||||| | ||||| || | || ||| | ||||| || || ||||| || Sbjct 1354351 TCAAGATTTATGGTTTGCTATATTACAAAGCCAAATAGAAACAGGTGTACCATATATGTT 1354292 Query 111086 GTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAG 111145 ||||||||| | |||| ||||||||||||| |||||||| || ||||| | ||| Sbjct 1354291 ATATAAAGATTCTTGTAATGCTAAATCTAATCAAAAAAATTTAGGTACTATTAAATGTAG 1354232 Query 111146 TAATTTGTGCTGTG 111159 ||| || || |||| Sbjct 1354231 TAACTTATGTTGTG 1354218 Score = 179 bits (198), Expect = 9e-40 Identities = 577/880 (66%), Gaps = 23/880 (3%) Strand=Plus/Minus Query 131407 AAATAAACAAATTAAACGTTACACCCTATTTCCAATTAAACATCACGATGTTTTCGATAT 131466 ||||||| | | | | |||| || ||| |||||| | ||| || |||| ||| | Sbjct 128680 AAATAAAGAGAGTGATCGTTTTACTTTATATCCAATATTATATCCTGAAGTTTGGGATTT 128621 Query 131467 GTATAAGAAATCTGTTGCGGCCTTCTGGACTGTTGAAGAGATCGATATGACCAAAGATAT 131526 || |||||| ||| || | || ||||| | ||||| || ||| | | | ||| | Sbjct 128620 TTACAAGAAAGCTGAAGCTTCATTTTGGACAGCAGAAGAAATTGATTTATCTAGCGATTT 128561 Query 131527 TGATGATTGGGAAAAATTAACCTTGAATGAAAAAGATTTTGTTTCCAAAGTTCTTGCATT 131586 | |||| || ||||| | ||||| ||| ||||| | | || | ||||| Sbjct 128560 AAAAGATTTTGAGAAATTGAATGACAATGAGAAACATTTTATAAAGCATGTGTTAGCATT 128501 Query 131587 CTTCGCCGGAAGTGATGGCATTGTTATTGAAAATCTTGTTATTAATTTCATTCAAGAAA- 131645 || || | ||||||||| || || | || ||| | | || ||| || || |||| | Sbjct 128500 TTTTGCAGCAAGTGATGGTATAGTATTAGAGAATTTGGCTAGTAAATT--TTTAAGAGAG 128443 Query 131646 -TTGATATTCCTGAAGTAACATCGTTCTACACATTTCAAGCCGCTGTTGAATCTATTCAT 131704 || | || | |||| || | || || | |||||| ||||| ||| ||||||| Sbjct 128442 GTTCAAATAACAGAAGCAAAAAAATTTTATTCTTTTCAAATAGCTGTAGAAAATATTCAT 128383 Query 131705 AGCGAGATGTATTCATTATTGATTGAGAGTCTTGTTAAAAATGAAGATGATAAAAATAAA 131764 || | ||| ||||| ||||| | | | ||||| ||||| | || || | |||| Sbjct 128382 TCAGAAACATATAGTTTATTAATTGATAATTATATTAAAGATGAAAAAGA-AAGATTAAA 128324 Query 131765 TT-ATTTGATGCTGTAAATAAATTTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAA 131823 || |||| ||||| || | || | |||||| | ||||| |||||| |||||| || Sbjct 128323 TTTATTTCATGCTATAGAAAATATCCCTGCAGTAAAAAATAAAGCATTATGGGCAGCAAA 128264 Query 131824 ATGGATTCAAGATGATTCCGCTAATT---TTTCTACAAGACTTGTAGCTTTTGCTTGTGT 131880 ||||||| | ||| |||||| || || ||| | |||||| ||| ||||| Sbjct 128263 ATGGATTAATGATA------CTAATTCATTTGCTGAAAGGATAGTAGCTAATGCATGTGT 128210 Query 131881 TGAAGGTATATTCTTTTCAGGT-GCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGAT 131939 |||||| ||||| || ||| ||||| |||||||| |||||| |||| || | || Sbjct 128209 TGAAGGAATATTATTCAGTGGTAGCTTT-TGTGCTATTTTTTGGTTTAAAAAAC-AAAAT 128152 Query 131940 TGA-TGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAAGCATTGCATACT 131998 | | | ||| | |||| ||| |||| || |||||||||| | | ||||| Sbjct 128151 AAATTACATGGTTTAACATTTAGTAATGAATTAATAAGTAGAGATGAAGGACTACATACA 128092 Query 131999 GAATTTGCTATATTAATCTATAGAAAATTTGCTGATAAACTTGATGAAAATAATATTA-A 132057 || ||| | ||||| ||||| ||| | | |||||||| ||| | ||| || | Sbjct 128091 GATTTTAATTGCTTAATTTATAGTTTATTAGATAATAAACTTCCAGAACA-AATGGTACA 128033 Query 132058 ACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTACAGAAGCTTTGCCTTG 132117 | | || | | ||||| || || | || | ||||| ||| | || || || Sbjct 128032 AAATATTGTTAAAGAAGCTGTAGAAGTTGAAAGATCTTTTATATGTGAATCATTACCATG 127973 Query 132118 CAATTTGATTGGGATGAATGCT-GACTCTATGAAGGAGTACATTGAATTCGTTGCTGATC 132176 |||| || || |||||| || |||| |||| | || || ||||| ||||| ||| Sbjct 127972 TGATTTAATAGGTATGAATTCTAGACT-TATGTCTCAATATATAGAATTTGTTGCAGATA 127914 Query 132177 GTTTAATTAACCAACTTGGATATTCCAAGATTTATAACACCCAAAACCCCTATACATGGA 132236 | ||| | | | |||| || || |||| | | |||| || | | |||| Sbjct 127913 GATTATTAGAATGTTTAGGATGCTCTAAAATTTTCCATTCAAAAAATCCATTCAATTGGA 127854 Query 132237 TGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTCGA 132276 |||| | |||||| ||| |||| ||||| ||||| ||||| Sbjct 127853 TGGACTTAATTTCACTTCAAGGAAAAACAAACTTTTTCGA 127814 Score = 120 bits (132), Expect = 7e-22 Identities = 344/517 (67%), Gaps = 34/517 (7%) Strand=Plus/Minus Query 279057 AATTATATGGTATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCT---C 279113 |||||| ||| || || ||| | || ||||| || ||||| | |||||| | | Sbjct 1191163 AATTAT-TGGAATACCTAAATTAGAAGATGCTAATGATGCTGG---TAGTAAATATAGTC 1191108 Query 279114 AAGAATGTGCTTTATTTCTTACTGAGGGAGATTCTGCTGCTACAT-TTGCGATTGCTGGT 279172 |||||||| | || || | || || |||||| |||| |||| |||| | |||||| Sbjct 1191107 AAGAATGTACATTGATTTTAACAGAAGGAGATAGTGCTAAAACATCTTGCT-TAGCTGGT 1191049 Query 279173 TTATCTGTTATTGGTCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAAT 279232 || ||| || | ||| | ||||||||||| || |||||||||| ||||||| || | ||| Sbjct 1191048 TTGTCTATTGTAGGTAGAGATAAATATGGTGTTTTTCCTTTAAAAGGTAAATTATTAAAT 1190989 Query 279233 GCTCGTGATAAAATCACAACACAGGCTGGTTTAAAGCAAGTAAATGCTAATGCTG-AATT 279291 | | | ||| | | |||||| ||| | | | |||| | |||| Sbjct 1190988 GTTAGAGAT--------------GCGTCATTTAAA-CAACTTATGGATAATAAAGAAATT 1190944 Query 279292 GATTAATTTAAAACAAATATTGGGATTAGAGCAAGGTAAAAAATACAAAGAT-ACATCAA 279350 | | || | || || |||| ||||| | | ||| | |||||| | || || Sbjct 1190943 CAAAATATTTTTAGAATTA-TGGGTTTAGATATTACTGATAAAAATAAAGATGATATTAA 1190885 Query 279351 --GTTTACGATATGGTAAAATTATTATTTTGACAGACCAAGATTTAGATGGAAGTCACAT 279408 ||||| |||||||| | || ||| |||| || ||||||| ||||| ||||| Sbjct 1190884 AGGTTTAAGATATGGTTCCTTAATGATTATGACTGATCAAGATTATGATGGTTCACACAT 1190825 Query 279409 TAAAGGATTAATACTTAATTGGGTTGATACTTTCTGGCCAGAATTGTTGAATCAAAA--- 279465 |||||||||| | ||||| | | ||| || |||||| || || || || || Sbjct 1190824 TAAAGGATTACTTATTAATATGATACATAAATTTTGGCCAAGCTTATTAAAACATAAAGG 1190765 Query 279466 TTTTGTAAGTGTGTTTCAAACACCAATTATTAAGGCAACTAAAGGTAAAAAAGAAGAAGT 279525 ||| | |||| ||| |||||||||| | || | | ||||| | ||||| | Sbjct 1190764 TTTCCTTAGTGAATTTGTAACACCAATTGTAAAAGTACAAAAAGGAAGTCAAGAATATTC 1190705 Query 279526 ATTTTATTC-ATTGCAGAAGTTTGAACAATGGAAAGA 279561 |||| | | ||||| ||| | ||||||||||||||| Sbjct 1190704 TTTTTTTACTATTGCTGAA-TATGAACAATGGAAAGA 1190669 Score = 91.5 bits (100), Expect = 3e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 112581 ACAAAAGTTATTACACGTAACCTAAATAAAATTATTGACAAAACGACCTATCCAATTCAA 112640 || ||| ||||||| | || || |||||||||| || | || || ||| | || Sbjct 1354098 ACTAAAATTATTACCAGAAATTTAGATAAAATTATAGAAAGAAATTATTACCCAGTCAAA 1354039 Query 112641 AAAGCAAAACATTCTAATAACAAGCATAGACCAATTGGCATTGGCGTACAAGGATTAGCT 112700 | |||||| || |||| | || ||||| ||||| ||||| |||||||||||||| Sbjct 1354038 GAGGCAAAAACATCCAATACTAGACACAGACCTATTGGTATTGGTGTACAAGGATTAGCA 1353979 Query 112701 GATGTATTTATGATGATGCGAATTCCTTTTGATTCTGACCGTGCTAAATTCTTAAATGAA 112760 ||| ||||||| | | || ||| | ||| ||||| ||| ||| || ||| || Sbjct 1353978 GATACATTTATGTTATTAAGATATCCATATGAATCTGATGCTGCAAAAGAATTGAATAAA 1353919 Query 112761 AAGATTTTCGAAACAATCTATTTCGCTGCT 112790 | || || |||||||| || | |||||| Sbjct 1353918 AGAATATTTGAAACAATGTACTATGCTGCT 1353889 >seq9 Length=776283 Score = 123 bits (136), Expect = 6e-23 Identities = 160/216 (74%), Gaps = 5/216 (2%) Strand=Plus/Minus Query 58937 ACATAAAATTGACATAAAATATGACAAGGAGGAAGTGCCATTTTATCAATATCACTTACA 58996 |||||||||||||||||||||||||||||||| | |||||||| |||| ||| ||||| Sbjct 511913 ACATAAAATTGACATAAAATATGACAAGGAGGTAATGCCATTTGGTCAAGATCTTTTACA 511854 Query 58997 TTCCATGCACTGAAAATAATGCGACGAGAATGAGGGTCATTTTTAA-TAAGTTCTTCACA 59055 |||||||||| |||| ||| | | | ||| |||||||||| ||| || | | Sbjct 511853 TTCCATGCACACAAAAGAATTCTTCTACTTGTAGGATCATTTTTAATTAAATTTATTA-T 511795 Query 59056 ATGTTTTATTTGGTCAAATCCATTAGTATATTCAGTAT-TGGCATCAATG--TATTTATC 59112 || ||||| ||| |||| || ||| | | | | ||| |||| || |||| | | Sbjct 511794 ATTTTTTAATTGATCAACACCTTTATTTTCATAATTATCATGCATATTTGTATATTCAGC 511735 Query 59113 TCCCCAATAACGCCATTGAAAACCATATACAGGTCC 59148 ||| ||| | ||||||||||||||| | |||||| Sbjct 511734 TCCGAAATGTCTCCATTGAAAACCATAAATAGGTCC 511699 >seq5 Length=2479031 Score = 107 bits (118), Expect = 5e-18 Identities = 123/163 (75%), Gaps = 8/163 (5%) Strand=Plus/Minus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 ||| | || ||||| || ||||| | ||| |||||||| ||| |||||||| ||| Sbjct 1073258 GTTTTATTTAATAGACAGCCATCTTTACATCGTATGTCTATTATGTGTCATAAAGCAAAA 1073199 Query 305390 GTATTATCTGGATTG----ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGC 305445 ||||| ||||| || ||||| || |||| ||| ||| | ||||||||||| Sbjct 1073198 --ATTAT--GGATTACAAAACTTTTCGTTTTAATGAGTGTGTATGTTCTCCTTATAATGC 1073143 Query 305446 GGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 ||||||||||| |||||||||||| |||||||||| ||| || Sbjct 1073142 TGATTTTGATGGTGATGAAATGAATTTGCATGTACCCCAAACA 1073100 >seq8 Length=842317 Score = 100 bits (110), Expect = 7e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||| ||| || | |||| || | || |||||||| || ||| | ||||||||| Sbjct 612577 AGACATATGACAGATGAAGATTATATTTTATTTAATAGGCAGCCTTCATTACATAAAATG 612636 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 ||| |||| |||||| | ||| ||||| | | |||||||| |||||| || Sbjct 612637 AGTATTATGGGTCATAAGGCTAAAATATTACCATATTCAACATTTCGTTTAAATTTATCA 612696 Query 305426 GCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 | | | || |||||||| ||||| ||||||||||||||||| | || || ||||| Sbjct 612697 GTTACATCTCCATATAATGCCGATTTCGATGGAGATGAAATGAACTTACACTTAGCTCAA 612756 Query 305486 TCA 305488 ||| Sbjct 612757 TCA 612759 >seq13 Length=1110535 Score = 95.1 bits (104), Expect = 3e-14 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 72220 GTAATGAAGAATTGCGAGTTATTTGAATCAGGACCCGAGTTAGCCATAGAAACCAAACCT 72279 ||||| || ||||| | ||||| || ||| || | || |||||| | | ||| Sbjct 162528 GTAATAAAAAATTGGCATCCATTTGTATTAGGTCCTGTATTTGCCATACTTAAAAGTCCT 162469 Query 72280 GCTTCTGAATGCTTTAATAAGAAA-TTCTCATCTTCAAAAGTTTCTCCATATATACTTTG 72338 ||| ||| ||||||| ||| || ||||| |||||| ||| |||||||||||| Sbjct 162468 TCTTTATCATG-TTTAATATCAAAATTTTCATCATCAAAATGTTCACCATATATACTTAC 162410 Query 72339 ACCTGAGCTTCCATCAAAGTTCACAATATCACCTCCTTGAACCATAAAATTATTAATTAC 72398 || | || |||| | | || |||| ||| || ||||||| |||||||| |||||||| Sbjct 162409 ACATCCACTACCATTATAATTAACAAAATCTCCCCCTTGAATCATAAAATCTTTAATTAC 162350 Query 72399 TCTATGGAA 72407 |||||| || Sbjct 162349 TCTATGAAA 162341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186800133369513