Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq169 105 2e-17 >seq169 Length=6603 Score = 105 bits (116), Expect = 2e-17 Identities = 146/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | ||||||||||| || ||| | || || ||| |||||||| | || Sbjct 5536 AAAACATTAACAGGAAAAACCATTACTCTCGATGTTGAACCATCTGACACCATTGAGAAT 5477 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||||||| |||||||| |||||||||||| || ||| |||||| | || || Sbjct 5476 GTTAAAGCAAAA-ATTCAAGATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATT 5418 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||||| || || || || ||||| ||| | | |||||||| | || ||||| || Sbjct 5417 TGCCGGAAAACAATTAGAGGACGGAAGAACTCTATCAGATTACAATATTCAAAAAGAATC 5358 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 || | ||| | || || ||| Sbjct 5357 CACCTTACACTTAGTGTTAAGA 5336 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 206196 AGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAA 206255 ||||||||| || || | || || || |||||||| | || |||||| ||| Sbjct 5753 AGGAAAAACTATAACCCTTGACGTCGAGCCATCTGACACTATTGAGAATGTAAAGGCAAA 5694 Query 206256 GATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCA 206315 |||||||| |||||||||||| || ||| |||||| | || || || ||||| || Sbjct 5693 AATTCAAGATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATTTGCTGGAAAACA 5634 Query 206316 GTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCT 206375 || ||||||||||| || || | || |||||| | || || || ||||| | ||| | Sbjct 5633 ATTAGAAGATGGAAGAACATTATCAGACTACAACATTCAAAAGGAATCTACATTACACTT 5574 Query 206376 TGTTTTGAGACT 206387 || || ||||| Sbjct 5573 AGTGTTAAGACT 5562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181808186648193