Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq169 152 5e-32 seq6 113 4e-20 seq5 113 4e-20 >seq169 Length=6603 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||||||||| |||||| | || || |||| || ||| ||| | Sbjct 5551 ATGCAAATTTTTGTTAAAACATTAACAGGAAAAACCATTACTCTCGATGTTGAA-CCATC 5493 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || ||| | || ||| ||||||| |||||||| || || || || || || Sbjct 5492 TGACACCATTGAGAATGTTAAAGCAAAAATTCAAGATAAAGAAGGAATTCCACCTGACCA 5433 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||||| | || | | ||| |||||| | || || | |||| | | |||||||| Sbjct 5432 ACAAAGATTAATATTTGCCGGAAAACAATTAGAGGACGGAAGAACTCTATCAGATTACAA 5373 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||||||||||||||| | || |||||||||||||| ||||| || Sbjct 5372 TATTCAAAAAGAATCCACCTTACACTTAGTGTTAAGATTAAGAGGTGG 5325 Score = 102 bits (112), Expect = 7e-17 Identities = 147/203 (72%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 25202 GGAAAATCGATCACGATCGAAGTCGAAGCCAAC-GATACTATCGAGCAAGTAAAACAAAA 25260 |||||| | || || | || ||||| |||| | || ||||| ||| | ||||| ||| Sbjct 5752 GGAAAAACTATAACCCTTGACGTCGA-GCCATCTGACACTATTGAGAATGTAAAGGCAAA 5694 Query 25261 AATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACA 25320 |||| |||||||| || || || || || || |||||| | || | | || ||||| Sbjct 5693 AATTCAAGATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATTTGCTGGAAAACA 5634 Query 25321 ACTCGAAGATGATAGAAA--TGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCAT 25378 | | ||||||| |||| | |||| | ||||| |||||||| ||||| || | || Sbjct 5633 ATTAGAAGATGGAAGAACATTATCAG--ACTACAACATTCAAAAGGAATCTACATTACAC 5576 Query 25379 TTAGTGTTAAGATTGAGAGGAGG 25401 |||||||||||| | ||||| || Sbjct 5575 TTAGTGTTAAGACTAAGAGGTGG 5553 >seq6 Length=2947581 Score = 113 bits (124), Expect = 4e-20 Identities = 428/654 (65%), Gaps = 26/654 (4%) Strand=Plus/Plus Query 136782 CTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTTCAATAGTACT-TTTTGCTTAATTT 136840 |||||| ||| || || | |||||| ||||| | ||||| || | ||||||||||||| Sbjct 1353391 CTGATCAATGAAAATACCCCTGTCTGCAGCCATAT-CAATAATATTCTTTTGCTTAATTT 1353449 Query 136841 CCCAAGCGGTTTTAAAGAGCTCCTTGACATTGGGCGGAATTTCATCGATATTCTGTACAG 136900 |||| | ||||| | | |||||| | | || |||||| |||| || ||| Sbjct 1353450 CCCATACTGTTTTGTACAACTCCTTTAAGTCATCTGGTATTTCACTTATATATTGAACAC 1353509 Query 136901 ATCCGTTGT----TTTTGATGATTTTCATCATGAGATCAGTCGAGTATACGTTGCTCTCT 136956 ||| |||| | || || || | ||||| ||| | | || || | || || Sbjct 1353510 TTCCATTGTGAGCTATTAATTGTTGTT-TCATGTCTTCATCCCA-TAAACCT--CTTTCA 1353565 Query 136957 A-TGAGTTTATCGACGAGATGCTGATTTACTACTTGATATTCGCCCGATAGCACTCTGCG 137015 | | | | | | || | ||| |||| || || | |||| || || ||||| | Sbjct 1353566 AATAAATCTTTTAACAA-ATGGGGATTAACAACGAAAAATTCTCCACTTAAAACTCTTCT 1353624 Query 137016 TACGTACAGATTACTAGTGAACGGCTCGAACGATTCGTTGTTACCCAAAATCTGTGCAGT 137075 || | ||||||||| | || || || ||||| || || || | ||| |||| ||| Sbjct 1353625 ATAATAAATATTACTAGTATATGGTTCAAAGGATTCATTATTTCCAAGAATTTGTGAAGT 1353684 Query 137076 CGTCGCTGTCGGCATGTAAGCGATCAACAATGAATTCCGTAAACCGTG--TACGGCCAAT 137133 | || || ||||| || | || ||||| || | |||||| || |||| ||| Sbjct 1353685 AGATGCAGTTGGCATAGGTGCTAATAATAATGAGTTTCTTAAACCATGCTTACG---AAT 1353741 Query 137134 TGTTGCTTG-AGCTCTTTCCAGTTCCACAGATTGTT--CGATTGGGTTAT-ATTCCACAA 137189 | | |||| | || | ||| | ||| ||||| | | | ||| |||||||| Sbjct 1353742 TTTAGCTTTTAATTCATCCCAATCCCAATATTTGTTATCAACT---TTAGCATTCCACAT 1353798 Query 137190 ATCAAACTGCAAAAGTCCGCGACTTGCAGGACTTTCTGCATAAGAATCATATGTTCCGTG 137249 |||||| || || | ||| | || || |||||| || ||| || ||||||| ||| || Sbjct 1353799 ATCAAATTGTAATATTCCTTGGCTAGCTGGACTTCCTTGATAGGATTCATATGGTCCATG 1353858 Query 137250 CAGTTTCGCCAGTTCAATACTCTGGACTAGTGCGCCATAGTAAATAGTTTCGGAGATTTT 137309 | |||| ||||| | | ||| || ||||||| || ||||| | ||| | Sbjct 1353859 TATAGAAGCCAATTCAACAGACATTTCTAAAGCAGCATAGTACATTGTTTCAAATATTCT 1353918 Query 137310 TCTATTCAATTCTCTAGCTTCTTGGCTGTCGTAGGGCATATC-CAATATAGCGAAAGCAT 137368 | ||||||||||| | || | | || || || ||||| |||| || | || Sbjct 1353919 TTTATTCAATTCTTTTGCAGCATCAGATTCATATGG-ATATCTTAATAACATAAATGTAT 1353977 Query 137369 CTGCAAGTCCTTGAATACCGATACCGATAGGTCTGTGTTTAAAATTTGATATTT 137422 |||| | |||||| | ||| ||||| |||||||||||| || ||| ||| ||| Sbjct 1353978 CTGCTAATCCTTGTACACCAATACCAATAGGTCTGTGTCTAGTATTGGATGTTT 1354031 >seq5 Length=2479031 Score = 113 bits (124), Expect = 4e-20 Identities = 153/209 (73%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 25166 TTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTC 25225 || || || |||||| | ||||| ||||||||||| |||||| | || || | || || Sbjct 2307833 TTTAAGAAAATGCAAATTTTTGTTAAAACATTAACTGGAAAAACAATTACCCTTGATGTT 2307774 Query 25226 GAAGCCAAC-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACC 25284 || |||| | ||||| || ||| | || || ||||||| |||||||| || || || Sbjct 2307773 GA-GCCATCTGATACGATTGAGAATGTGAAGGCAAAAATTCAAGATAAAGAAGGAATTCC 2307715 Query 25285 GCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTC 25342 || ||||| |||||| | || | | || |||||| | ||||||| |||| | || Sbjct 2307714 ACCTGATCAACAAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGAACATTATC 2307655 Query 25343 AGCGATTACAATATTCAAAAAGAATCCAC 25371 || |||| ||||||||||| ||||| || Sbjct 2307654 AG--ATTATAATATTCAAAAGGAATCTAC 2307628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445089765454560