Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq5 118 9e-22 seq169 113 4e-20 >seq5 Length=2479031 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 106257 AAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCC 106316 |||||||||||||||||||||||||| ||||| || || |||||| | || || || Sbjct 2307827 AAAATGCAAATTTTTGTTAAAACATTAACTGGAAAAACAATTACCCTTGATGTTGAGCCA 2307768 Query 106317 GGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGAT 106376 ||| | ||| | ||||| ||||||| || |||||||| | || |||| Sbjct 2307767 TCTGATACGATTGAGAATGTGAAGGCAAAAATTCAAGATAAAGAAGGAATTCCACCTGAT 2307708 Query 106377 CAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTAC 106436 |||||||| | || | ||| || ||||||||||||||| | ||| | ||||| Sbjct 2307707 CAACAAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGAACATTATCAGATTAT 2307648 Query 106437 AACATACAAAAAGAATCTACACTACATTTAGTA 106469 || || ||||| ||||||||| |||| || ||| Sbjct 2307647 AATATTCAAAAGGAATCTACATTACACTTGGTA 2307615 >seq169 Length=6603 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||||||||||||||| || || || |||||||| | || ||||| Sbjct 5551 ATGCAAATTTTTGTTAAAACATTAACAGGAAAAACCATTACTCTCGATGTTGAACCATCT 5492 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | || ||| ||||||| || |||||||| | || ||| ||| Sbjct 5491 GACACCATTGAGAATGTTAAAGCAAAAATTCAAGATAAAGAAGGAATTCCACCTGACCAA 5432 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| | || | ||| || ||||||||||| || | |||| | |||||||| Sbjct 5431 CAAAGATTAATATTTGCCGGAAAACAATTAGAGGACGGAAGAACTCTATCAGATTACAAT 5372 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || ||||||||||| || |||| ||||| || || ||| |||| || Sbjct 5371 ATTCAAAAAGAATCCACCTTACACTTAGTGTTAAGATTAAGAGGTGG 5325 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 106343 AAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAA 106402 ||||||| || |||||||| | || ||| |||||||| | || | ||| || || Sbjct 5696 AAAAATTCAAGATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATTTGCTGGAAA 5637 Query 106403 ACAATTAGAAGATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACA 106462 ||||||||||||| | ||| | || |||||||| ||||| ||||||||| |||| Sbjct 5636 ACAATTAGAAGATGGAAGAACATTATCAGACTACAACATTCAAAAGGAATCTACATTACA 5577 Query 106463 TTTAGTATTGAGGTTACGAGGAGG 106486 ||||| || || || |||| || Sbjct 5576 CTTAGTGTTAAGACTAAGAGGTGG 5553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402325515474464