Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq169 134 1e-26 seq5 107 2e-18 >seq169 Length=6603 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| | || ||||| | ||||| |||||||| |||||||| ||||| || Sbjct 5325 CCACCTCTTAATCTTAACACTAAGTGTAAGGTGGATTCTTTTTGAATATTGTAATCTGAT 5384 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || ||| || | ||||| || ||||| || || | || || || || || Sbjct 5385 AGAGTTCTTCCGTCCTCTAATTGTTTTCCGGCAAATATTAATCTTTGTTGGTCAGGTGGA 5444 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| |||||||||||| ||| || || | ||||| || | ||| || Sbjct 5445 ATTCCTTCTTTATCTTGAATTTTTGCTTTAACATTCTCAATGGTGTCAGATGGTTCAACA 5504 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||||||||||||||| || ||||| |||||||| ||||||||||| Sbjct 5505 TCGAGAGTAATGGTTTTTCCTGTTAATGTTTTAACAAAAATTTGCAT 5551 Score = 95.1 bits (104), Expect = 1e-14 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || ||||| |||| ||||| | ||||| || ||||||||||||||||||||||| | Sbjct 5553 CCACCTCTTAGTCTTAACACTAAGTGTAATGTAGATTCCTTTTGAATGTTGTAGTCTGAT 5612 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | | | || || | ||||| || ||||| || || | || || || || || Sbjct 5613 AATGTTCTTCCA-TCTTCTAATTGTTTTCCAGCAAATATTAATCTTTGTTGGTCAGGTGG 5671 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || |||||||| |||||||||||| || || || | ||||| || | || || Sbjct 5672 AATTCCTTCTTTATCTTGAATTTTTGCCTTTACATTCTCAATAGTGTCAGATGGCTCGAC 5731 Query 134666 GTCGAGAGTAATGGTTTTACC 134686 ||| || || || ||||| || Sbjct 5732 GTCAAGGGTTATAGTTTTTCC 5752 >seq5 Length=2479031 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCT 134568 ||||| || |||||||||||||| || || || | || | | | | || || | | Sbjct 2307621 GTGTAATGTAGATTCCTTTTGAATATTATAATCTGATAATGTTCTTCCA-TCTTCTAATT 2307679 Query 134569 GTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTT 134628 |||| || ||||| || || | || ||||| || || || |||||||| |||||||||| Sbjct 2307680 GTTTTCCAGCAAATATTAATCTTTGTTGATCAGGTGGAATTCCTTCTTTATCTTGAATTT 2307739 Query 134629 TTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGG 134688 || || || || | || || || | || || || || ||||| ||||| || | Sbjct 2307740 TTGCCTTCACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATTGTTTTTCCAG 2307799 Query 134689 TTAAAGTTTTAACGAAAATTTGCATTTTGTT 134719 |||| |||||||| |||||||||||||| || Sbjct 2307800 TTAATGTTTTAACAAAAATTTGCATTTTCTT 2307830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505393137539160