Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq6 488 8e-133 >seq6 Length=2947581 Score = 488 bits (540), Expect = 8e-133 Identities = 1141/1701 (67%), Gaps = 44/1701 (3%) Strand=Plus/Plus Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCC 68574 ||||| |||||| || || ||||| ||||| | |||||| ||||||| ||||||| Sbjct 1353392 TGATCAATGAAAATACCCCTGTCTGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 1353451 Query 68575 CAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG---CTCGTATTTTGAATGGAT 68631 || | || || | | || || | |||||||| | || ||| ||||| | Sbjct 1353452 CATACTGTTTTGTACAACTCCTTTAAGTCATCTGGTATTTCACTTATATATTGAACACTT 1353511 Query 68632 CCACCATCGGATAT-AATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAA 68690 ||| | | ||| |||| | | || || || |||| ||| || ||| || ||| Sbjct 1353512 CCATTGTGAGCTATTAATTGTTGT-TTCATGTCTTCATCCCATAAACCTCTTTCAAATAA 1353570 Query 68691 AACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTA 68750 | || | | | ||| |||||||| | |||||| ||| ||| ||||| | | || Sbjct 1353571 ATCTTTTAACAAATGGGGATTAACAACGAAAAATTCTCCACTTAAAACTCTTCTATAATA 1353630 Query 68751 AATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGC 68810 ||||||||| ||||||||||| | |||||||||||||| |||||||| | ||| ||||| Sbjct 1353631 AATATTACTAGTATATGGTTCAAAGGATTCATTATTTCCAAGAATTTGTGAAGTAGATGC 1353690 Query 68811 AGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGA-TTTTATCTT 68869 ||||||||||||||| | ||||| ||||| | |||||| ||| || ||||| ||| Sbjct 1353691 AGTTGGCATAGGTGCTAATAATAATGAGTTTCTTAAACCATGC-TTACGAATTTTAGCTT 1353749 Query 68870 TTAGATGTTTCCAATCCCAAAGATCAGATGGTA-CAAC------ATTCCAAAGATCGTAT 68922 ||| | | |||||||||| | || || |||| |||||| | ||| || Sbjct 1353750 TTAATTCATCCCAATCCCAATATT----TGTTATCAACTTTAGCATTCCACATATCAAAT 1353805 Query 68923 TGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCA 68982 |||| ||||| | || || ||| | ||| | |||||| ||||| | | Sbjct 1353806 TGTAATATTCCTTGGCTAGCTGGACTTCCTTGATAGGATTCATATGGTCCATGTATAGAA 1353865 Query 68983 GCTAGTTCA-CA-ACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTAT 69040 || | |||| || || | ||||| ||| | || || |||||||| || || | |||| Sbjct 1353866 GCCAATTCAACAGACATT--TCTAAAGCAGCATAGTACATTGTTTCAAATATTCTTTTAT 1353923 Query 69041 TGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCA 69100 | | |||| ||| | | || ||||||| ||| | ||||||| |||||| | Sbjct 1353924 TCAATTCTTTTGCAGCATCAGATTCATATGGATATCTTAATAACATAAATGTATCTGCTA 1353983 Query 69101 ATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAA 69160 |||| || || |||||||| |||||||| ||||| |||| || ||| || ||| | Sbjct 1353984 ATCCTTGTACACCAATACCAATAGGTCTGTGTCTAGTATTGGATGTTTTTGCCTCTTTGA 1354043 Query 69161 TAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGT 69220 || |||||||| | ||||||||||||| | ||||| | | | |||| | | Sbjct 1354044 CTGGGTAATAATTTCTTTCTATAATTTTATCTAAATTTCTGGTAATAATTTTAGTAATTT 1354103 Query 69221 CCTTTAGTTTGAGAAAATCAAA-------TCGTCCATCTATAACAAACATATTCAGTGCT 69273 | | || || ||||| ||| | |||| | | ||||| || | ||| Sbjct 1354104 CATATAACTTTTTAAAATTAAATTCTTTTTTTTCCAAATCT-ACAAATTTACATAAAGCT 1354162 Query 69274 ACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTA 69333 | |||||| | |||||| || || || |||| || || ||||| ||| || || | Sbjct 1354163 ATAGATGCCAAATTACATACAGCAACTTCATCAGGGGATGTATATTCTATAATTTCACAA 1354222 Query 69334 CATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCG 69393 |||| ||||||||||| ||||| || | ||||| |||||| || ||||| | Sbjct 1354223 CATAAGTTACTACATTTAATAGTACCTAAATTTTTTTGATTAGATTTAGCATTACAAGAA 1354282 Query 69394 TCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAA 69453 || || || | ||| | || ||| ||||| || || || | |||| ||| Sbjct 1354283 TCTTTATATAACATATATGGTACACCTGTTTCTATTTGGCTTTGTAATATAGCAAACCAT 1354342 Query 69454 ACGACCCTAGCATTTATTACGGTCTTGTAACGC---TTCTCTTTTTCATATTGTGTATAT 69510 | | |||| | || || || | | | || |||| |||||||| |||||| Sbjct 1354343 AAATCTTGAGCA---AGAACTGTTTTTTTTCCCATATTTTCTTCTTCATATTTAGTATAT 1354399 Query 69511 AGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATC 69570 | ||| ||||| || ||||| ||| || || |||||||||||||||||||| Sbjct 1354400 AATTTTTCAAATTCTTCACCCCATGTTTCACTTAAACCTGGACATTCATTTGGACACATT 1354459 Query 69571 AATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCT 69630 | | ||| | || || ||||||| |||||||| ||||| |||| ||| | ||| Sbjct 1354460 AGGGTCCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACAGCA 1354519 Query 69631 ATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAAC 69690 ||| | ||||| | ||| |||||| ||||| |||||| | | ||| | ||| Sbjct 1354520 TAAAATAAATCTCGTGCTCTTAATTCTTCTTTTCCATGATTTTTCCTTAAATCTAAAAAT 1354579 Query 69691 TCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTT 69750 || | ||||| |||||||||||||| | ||| | || | ||| ||||| | Sbjct 1354580 TCAAATATATCTGAATGCCATGGTTCAATATAAACAGCAAAAGATCCTTTACGTTTTCCT 1354639 Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || || ||||||| ||||| ||||||| |||| | ||||| | ||| || | | |||| Sbjct 1354640 CCACCTTGATCTACATATCTTGCAGTGTCATTAAAAACTCTTAACATAGGTACTAAACCA 1354699 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATA--G 69868 |||||| | ||||| || || ||||||| | ||| | ||| || || | Sbjct 1354700 TTAGATATTCCATTGGTACCTCTAATATAA--GAATTTTGTCCTCTTATGTCTTGTACTG 1354757 Query 69869 ATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATA 69928 || ||| || |||||||| ||||| |||| |||||| |||| | || ||| | | Sbjct 1354758 CTACACCAATACCTCCTGCAGTTTTACTAATTAAAGCACATTGTTTTAGAGTTTCAAAAA 1354817 Query 69929 TACCCTCTATGCTATCATCTATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGT 69987 |||| || || ||| || |||| | ||| ||| ||||| ||||||||| || | | Sbjct 1354818 TACCTTCAATAGAATCTGCTTTCATCGATAATAAG-AAACAAGAAGACATTTG-TGGTCT 1354875 Query 69988 -ATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAG 70046 || || | ||||||||||||||||| ||| || ||||| |||| | ||| | | Sbjct 1354876 GGGCGTCCCTGAATTAAATAATGTAGGAGTTGCATGGGTGAAATATTTCTGAGACATTAA 1354935 Query 70047 ATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCAT 70106 || |||||||| | |||| |||||||| ||| || || || | || | ||| Sbjct 1354936 ATGATATGTTTCTAGAGCTTTATCTATATCATCTATATGTATACCAATAGAAACTCTCAT 1354995 Query 70107 CAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTC 70166 || | ||| ||||||| ||| | |||||||||| || || | || ||| |||| Sbjct 1354996 TAATAAATGTTGAGGTCTTTCAATAATTTTATTATTAATACGTAATAAATAAGATCTTTC 1355055 Query 70167 CAGAGTTTTAAACCCAAAATA 70187 || |||||||| |||||||| Sbjct 1355056 CAAGGTTTTAAATCCAAAATA 1355076 Score = 264 bits (292), Expect = 2e-65 Identities = 601/893 (67%), Gaps = 26/893 (3%) Strand=Plus/Plus Query 39307 TTGTGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTT 39366 ||| | ||| ||||| |||||| || || | || | |||||||||||| || ||||| Sbjct 127771 TTGGGCCATGACTCCTGATTTTTGATAATCTGCGACCCTTTTCTCGAAAAAGTTTGTTTT 127830 Query 39367 GCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAttttttttt 39426 |||| | ||| || ||||| ||| || ||||| ||| || | |||| Sbjct 127831 TCCTTGAAGTGAAATTAAGTCCATCCAATTGAATGGATTTTTTGAATGGAAAATTTTAGA 127890 Query 39427 AAATCCTAA---TTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCAT 39483 ||||||| |||| ||| ||||||||||||||||||||||| ||| ||| | Sbjct 127891 GCATCCTAAACATTCT--AAT-AATCTATCTGCAACAAATTCTATATATTGAGACATAAG 127947 Query 39484 TTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGAT 39543 | | ||||||| ||||| | | | ||||| | || || ||| | |||| | Sbjct 127948 TCTAGAATTCATACCTATTAAATCACATGGTAATGATTCACATATAAAAGATCTTTCAAC 128007 Query 39544 GTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGC---AATAA 39600 ||||| || ||| | | || | ||| | | || || || ||||| Sbjct 128008 TTCTACAGCTTCTTTAACAATATTTTGTACCATTTGTTCTGGAAGTTTATTATCTAATAA 128067 Query 39601 ATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTC 39660 | || | |||||||| || || |||||| || ||||||||||| |||||||| Sbjct 128068 AC---TATAAATTAAGCAATTAAAATCTGTATGTAGTCCTTCATCTCTACTTATTAATTC 128124 Query 39661 GTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAA 39720 ||| |||||| | ||| | | | | | ||||| | |||||| || ||| |||| Sbjct 128125 ATTACTAAATGTTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAAAATAGCA-CAAA 128183 Query 39721 AGAT-CCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA-- 39777 || | ||| || || || ||||| || |||| || || | || || | | Sbjct 128184 AGCTACCACTGAATAATATTCCTTCAACACATGCATTAGCTACTATCCTTTCAGCAAATG 128243 Query 39778 -ACTTGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCA 39836 | | ||||||||| ||||| || |||||| ||||| || ||||| ||| | Sbjct 128244 AATTAGTATCATTA---ATCCATTTTGCTGCCCATAATGCTTTATTTTTTACTGCAGGGA 128300 Query 39837 TTGTTTCTATAGCATTAAAGAGA--TAATGTTT-TTCATCACTATCTTTAACATATGTAT 39893 | |||||||||||| ||| | | |||| ||| || || |||||||| ||| ||| Sbjct 128301 TATTTTCTATAGCATGAAATAAATTTAATCTTTCTTTTTC---ATCTTTAATATAATTAT 128357 Query 39894 CTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAA 39953 | ||||| | |||||| |||||||||| || ||||| | || || ||||| |||| Sbjct 128358 CAATTAATAAACTATATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAA 128417 Query 39954 AACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCA 40013 | | ||||||| || ||||| |||||| ||||| | |||||||| || | Sbjct 128418 ATTTTTTTGCTTCTGTTATTTGAACCTCTCTTAAAAATTTACTAGCCAAATTCTCTAATA 128477 Query 40014 CTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGG 40073 |||| |||||||| || ||||||||||| || ||||| || ||||||| ||| |||| | Sbjct 128478 CTATACCATCACTTGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTGT 128537 Query 40074 GTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAA 40133 ||||||| | | || || | ||| | |||| ||| | |||||| |||||||||| Sbjct 128538 CATTCAATTTCTCAAAATCTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAA 128597 Query 40134 ACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGA 40186 | || || || || || ||||| | | ||| | ||| ||||| ||||||| Sbjct 128598 ATGAAGCTTCAGCTTTCTTGTAAAAATCCCAAACTTCAGGATATAATATTGGA 128650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686901647562120