Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq6 215 4e-51 seq9 179 3e-40 seq8 131 1e-25 >seq6 Length=2947581 Score = 215 bits (238), Expect = 4e-51 Identities = 590/878 (67%), Gaps = 37/878 (4%) Strand=Plus/Minus Query 43711 TCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGAC 43770 |||||| ||||| ||| | ||| | | ||||| ||||| | || ||||||||||| Sbjct 128650 TCCAATATTATATCCTGAAGTTTGGGATTTTTACAAGAAAGCTGAAGCTTCATTTTGGAC 128591 Query 43771 AGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTG-GATTGCATTAAAACCACAA- 43828 |||||||||| ||||||| ||| || ||| | ||| || | | | || |||| Sbjct 128590 AGCAGAAGAAATTGATTTATCTAGCGATTTAAAAGATTTTGA--GAAATTGAATGACAAT 128533 Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888 || |||||||||||| || || || |||||||| || || || || ||||| Sbjct 128532 GAGAAACATTTTATAAAGCATGTGTTAGCATTTTTTGCAGCAAGTGATGGTATAGTATTA 128473 Query 43889 GAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTAT 43948 || ||||||| |||| ||| ||| |||||| || |||||||| | |||||| Sbjct 128472 GAGAATTTGGCTAGTAAATTTTTAAGAGAGGTTCAAATAACAGAAGCAAAAAAATTTTAT 128413 Query 43949 GGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACG 44008 |||||||| || |||||||||||||||| |||| || ||| | | || |||| Sbjct 128412 TCTTTTCAAATAGCTGTAGAAAATATTCATTCAGAAACATATAGTTTATTAATTGATAAT 128353 Query 44009 TACATCAAAGATGGGCACGAGAAGCATCGA-TTGTTTAATGCGATAGAAACAGTACCTGC 44067 || || ||||||| | || ||| | | || ||| |||| ||||||| | ||||| Sbjct 128352 TATATTAAAGATGAAAAAGA-AAGATTAAATTTATTTCATGCTATAGAAAATATCCCTGC 128294 Query 44068 GATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGA 44127 | ||| |||||||| ||||| |||||||| ||| | | |||| |||| || Sbjct 128293 AGTAAAAAATAAAGCATTATGGGCAGCAAAATGGATTAATGATACTAATTCATTTGCTGA 128234 Query 44128 ACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGTTTGCGGCCA 44186 | | | || || |||| ||| ||||| || || || || | | |||| || | Sbjct 128233 AAGGATAGTAGCTAATGCATGTGTTGAAGGAATATTATTCAGTGGTAGCTTTTG-TGCTA 128175 Query 44187 TATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAA 44246 | |||||||| || |||| | | | | ||| || || ||| ||||| ||||||| Sbjct 128174 TTTTTTGGTTTAAAAAACAAAATAAATTACATGGTTTAACATTTAGTAATGAATTAATAA 128115 Query 44247 GTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATA-TCTAGGAGAC 44305 || | |||||||| ||||| |||||| |||| ||| || ||| | || ||| Sbjct 128114 GTAGAGATGAAGGACTACATACAGATTTTAATTGC---TTAATT-TATAGTTTATTAGAT 128059 Query 44306 GATAAGCCTTCATGTAAGACAAT--TAC-AGATATTGTTGTAGAGGCAGTAAAGATAGAA 44362 |||| | | || || | ||| ||| | |||||||| ||| || ||| | | ||| Sbjct 128058 AATAAACTTCCA--GAACA-AATGGTACAAAATATTGTTAAAGAAGCTGTAGAAGTTGAA 128002 Query 44363 CAAGAATTTATGACAACAGCATTACC-TGTAAATTTAATAGGAATGAA---TGAACTTTT 44418 | ||||| | ||||||| ||| |||||||||| ||||| | |||| Sbjct 128001 AGATCTTTTATATGTGAATCATTACCATGT-GATTTAATAGGTATGAATTCTAGACTT-- 127945 Query 44419 GATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAA---CTGGGTTGCGA 44475 ||| |||||||| |||| |||||||| | ||| || ||| | || ||| Sbjct 127944 -ATGTCTCAATATATAGAATTTGTTGCAGATAGATTA---TTAGAATGTTTAGGATGCTC 127889 Query 44476 TAAACACTAT--ATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGC 44533 |||| | | | ||| | |||| || || ||| ||||| ||||| | |||| Sbjct 127888 TAAA-ATTTTCCATT-CAAAAAATCCATTCAATTGGATGGACTTAATTTCACTTCAAGGA 127831 Query 44534 AAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCA 44571 |||||||||||||| || ||| | || | ||| ||||| Sbjct 127830 AAAACAAACTTTTTCGAGAAAAGGGTCGCAGATTATCA 127793 >seq9 Length=776283 Score = 179 bits (198), Expect = 3e-40 Identities = 335/489 (69%), Gaps = 6/489 (1%) Strand=Plus/Plus Query 40869 GATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATG 40928 ||| | || ||| ||||||| ||||| | | ||||||| ||||| ||||| | |||| Sbjct 511693 GATTTAGGACCTATTTATGGTTTTCAATGGAGACATTTCGGAGCTGAATATACAAATATG 511752 Query 40929 TACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATTAAA 40988 | | ||||| |||||||| | ||||||||| | | ||| || |||||| Sbjct 511753 CATGATAATTATGAAAATAAAGGTGTTGATCAATTAAAAAATATAATAAATTTAATTAAA 511812 Query 40989 TCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTG 41048 ||||| || || | || | ||||| || ||||| || || | | Sbjct 511813 AATGATCCTACAAGTAGAAGAATTCTTTTGTGTGCATGGAATGTAAAAGATCTTGACCAA 511872 Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCA 41108 |||||||| || ||||||||| | |||||||| ||||| |||| | |||| || | ||| Sbjct 511873 ATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTCGATGGAAAATTATCA 511932 Query 41109 TGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGT 41168 ||| |||||||||| ||| |||| | |||||||| || || ||||| || || | Sbjct 511933 TGTATTATGTATCAAAGGTCATGTGATTTAGGACTAGGAGTACCTTTTAATATTGCTTCT 511992 Query 41169 TATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTT 41228 ||| || | | || ||||||||||||| || ||||| |||||| |||||| | Sbjct 511993 TATTCTATTTTTACTCATATGATTGCACAAGTCTGTAATTTGCAACCTGCCGAATTTATA 512052 Query 41229 CACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTG 41288 ||| |||||| ||| ||| |||| | ||||||||| || |||| | ||||| Sbjct 512053 CACGTTTTAGGAAATGCGCATGTTTATAATAATCACATCGATAGTTTAAAAATTCAACTT 512112 Query 41289 ACACGAAAACCTAGACCATTTCCAACGCTACTT--ATTAAA-CGCGCTGTTGAAAACATT 41345 | ||| ||| ||||| ||||| |||| |||||| | | | || |||| ||| Sbjct 512113 AATAGAATACCATATCCATTCCCAAC---ACTTAAATTAAATCCAGATATTAAAAATATT 512169 Query 41346 GATGATTTT 41354 || |||||| Sbjct 512170 GAAGATTTT 512178 >seq8 Length=842317 Score = 131 bits (144), Expect = 1e-25 Identities = 333/500 (67%), Gaps = 15/500 (3%) Strand=Plus/Minus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 || ||||| | |||||||| ||||| |||||||||||||| || ||||| ||||||||| Sbjct 67096 CCGAAAATAATTAATGGTCCAGAAATATTAAATAAATATGTTGGACAATCAGAAGAAAAT 67037 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAG-GGCGCAAAAGT-- 19545 | || ||| ||| ||||| ||| ||| | |||| || |||| | || | Sbjct 67036 ATTCGTAATTTATTTAAAGACGCAGAAATGGAATATAAAC--AAAGTGGCG-AGAATTCA 66980 Query 19546 TCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGG---TTCT 19602 | || || || |||||| |||||||| | || || || |||| || ||||| | | Sbjct 66979 TTATTACATATAATAATATTAGATGAAATTGATGCTATATGTAGACAGAGAGGAAATGCA 66920 Query 19603 GGT----GTA--AATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGAC 19656 ||| ||| | ||| ||| |||| | ||| || |||||| | || || ||| | || Sbjct 66919 GGTTCAAGTAGTACTGGTGTAAATGATAGTGTAGTAAATCAATTACTATCTAAAATTGAT 66860 Query 19657 GGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATA 19716 || || || | |||||||| ||| | ||||| ||||| |||||| | || |||||| Sbjct 66859 GGAGTAAATAGTTTAAATAATATCTTATTAATTGGAATGACAAATAGAATAGATTTAATA 66800 Query 19717 GACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGAT 19776 || || || | || || || | || || || | || ||||| |||||| || Sbjct 66799 GATGAAGCTTTGCTTCGTCCTGGAAGATTTGAGTTACATATAGAAATATCCTTACCAAAT 66740 Query 19777 GAATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTT 19836 || || | | |||| ||||| || |||||| || ||| || | ||| Sbjct 66739 AAAGAAGGGAGAATTCAAATATTAAATATTCATACAAAAAATATGAGAATGAGTAATAAA 66680 Query 19837 TTAAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCA 19896 |||| | |||||| || || |||| | |||| || |||| | || ||| Sbjct 66679 TTAAGTTCAGATGTAAATATATTAGAATTAGCAGAAAAAACACCTAACTTTTCTGGAGCA 66620 Query 19897 GAACTTGAGGGATTAGTGAG 19916 ||| |||| || ||||| || Sbjct 66619 GAAATTGAAGGGTTAGTAAG 66600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397451964952165