Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq6 134 1e-26 >seq6 Length=2947581 Score = 134 bits (148), Expect = 1e-26 Identities = 924/1459 (63%), Gaps = 55/1459 (4%) Strand=Plus/Plus Query 130556 TGATCAATAAAAGCGCCCCTGTCTGCAGCCATGTCGAGCATGGTTTTATTTTTCATCTCC 130615 |||||||| ||| ||||||||||||||||| || | || | || | || || ||| Sbjct 1353392 TGATCAATGAAAATACCCCTGTCTGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 1353451 Query 130616 CAAGCGGTCTTGTATAGATCCCTAATGTGTTTGGGTATGCGCGCAATCGATTGAACGCTA 130675 || | || ||||| | ||| | | || | ||||| || ||||||| || Sbjct 1353452 CATACTGTTTTGTACAACTCCTTTAAGTCATCTGGTATTTCACTTATATATTGAACACTT 1353511 Query 130676 CCGTTGTTGGCTATAATTTCGTTGCG-CATACTTTTATCGTACAATCCAAGCTGTACAAG 130734 || |||| ||||| | || |||| ||| || ||| | || || | | | Sbjct 1353512 CCATTGTGAGCTATTAATT-GTTGTTTCATGTCTTCATCCCATAAACCTCTTTCAAATAA 1353570 Query 130735 ATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTA 130794 |||||||| |||||| ||||| | ||| || ||| | || | |||| || Sbjct 1353571 ATCTTTTAACAAATGGGGATTAACAACGAAAAATTCTCCACTTAAAACTCTTCTATAATA 1353630 Query 130795 AATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGC 130854 ||| || || || | |||||||||||||| || || || | ||||||| |||| ||| Sbjct 1353631 AATATTACTAGTATATGGTTCAAAGGATTCATTATTTCCAAGAATTTGTGAAGTAGATGC 1353690 Query 130855 GGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGC-T 130913 || ||||| ||| | ||||| || || | | ||| ||| | || |||| || | Sbjct 1353691 AGTTGGCATAGGTGCTAATAATAATGAGTTTCTTAAACCATGC-TTACGAATTTTAGCTT 1353749 Query 130914 TCAATTCATCCCAATCCCATAGAGAGGT----AGGTTTGACATTGTTCCACATATCAAAT 130969 | ||||||||||||||||| | | || | ||| || ||||||||||||||| Sbjct 1353750 TTAATTCATCCCAATCCCA-ATATTTGTTATCAACTTTAGCA---TTCCACATATCAAAT 1353805 Query 130970 TGTAGTATGCCTTTACTGGCGGGACTGGATTCGAACGATTCGTAGATTCCTTCGACACGA 131029 |||| ||| |||| || || ||||| || | ||||| || ||| | | | | Sbjct 1353806 TGTAATATTCCTTGGCTAGCTGGACTTCCTTGATAGGATTCATATGGTCCATGTATAGAA 1353865 Query 131030 GCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTT 131089 |||| || ||| ||||| | || || || ||||| ||| |||||| Sbjct 1353866 GCCAATTCAACAGACATTTCTAAAGCAGCATAGTACATTGTTTCAAATATTCTTTTATTC 1353925 Query 131090 AATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGA 131149 |||| ||| || | || || ||| || | | ||| ||||| | ||||| | Sbjct 1353926 AATTCTTTTGCAGCATCAGATTCATATGGATATCTTAATAACATAAATGTATCTGCTAAT 1353985 Query 131150 CCCTGTATCCCAACGCCCACCGGTCTATGTTTTAAATT--ACATTTACGCGAACATTCGG 131207 || |||| |||| || | ||||| ||| | ||| | ||| || | || Sbjct 1353986 CCTTGTACACCAATACCAATAGGTCTGTGTCTAGTATTGGATGTTTTTGC-CTCTTTGAC 1354044 Query 131208 TGGGATAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGC 131267 |||| ||| || | || || ||||| | |||||| | | ||||| || | Sbjct 1354045 TGGG-TAATAATTTCTTTCTATAATTTTATCTAAATTTCTGGTAATAATTTTAGTAA--- 1354100 Query 131268 TTTTC----AATTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAATTGATTTACA 131323 |||| || || | |||| ||| |||| | | |||||||| | || | Sbjct 1354101 -TTTCATATAACTTTTTAAAATTAAATTCTTTTTTTTCCAAATCTACAAATTTACATAAA 1354159 Query 131324 CATATTGACGCCAGATTACAAACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTCG 131383 ||| || |||| |||||| || || ||| ||| ||| | | |||||| Sbjct 1354160 GCTATAGATGCCAAATTACATACAGCAACTTCATCAGGGGATGTATATTCTATAATTTCA 1354219 Query 131384 GCGCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACA 131443 || || ||||| | || || || || ||||||| |||||| ||||||||| ||| Sbjct 1354220 CAACATAAGTTACTACATTTAATAGTACCTAAATTTTTTTGATTAGATTTAGCATT-ACA 1354278 Query 131444 TG-GTCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATGTATCG 131502 | || || || | ||| || || || ||||| | ||| ||| |||| || | Sbjct 1354279 AGAATCTTTATATAACATATATGGTACACCTGTTTCTATTTGGCTTT--GTAATATAGCA 1354336 Query 131503 AA--AGAGTTTTCGAGCAGACAATTGATATTTGTATTGGCCGCGTTT-TTCGTAAT-TTT 131558 || | | | | ||||| | || || ||| | || | ||| ||| | || ||| Sbjct 1354337 AACCATAAATCTTGAGCA-AGAACTG---TTTTTTTTCCCATATTTTCTTCTTCATATTT 1354392 Query 131559 CG--TACAACGTTTCAAAGTTTTGGCCAAACG---AACTGTCCAAATTGGGACATTCGCT 131613 | || || ||||||| | || || | | ||| ||| |||||||| | Sbjct 1354393 AGTATATAATTTTTCAAATTCTTCACCCCATGTTTCACT---TAAACCTGGACATTCATT 1354449 Query 131614 GGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCAC 131673 ||||||||||| | ||| || | || ||||| ||||||||| | ||| || || Sbjct 1354450 TGGACACATTAGGGTCCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAAC 1354509 Query 131674 CCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAttttt-ttCA 131732 ||||| || || || | ||||| ||| || |||||| | |||| |||||| | | Sbjct 1354510 CCATACAGCATAAAATAAATCTCGTGCTCTTAATTCTTCT-TTTCCATGATTTTTCCTTA 1354568 Query 131733 AATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTT 131792 ||| |||||| || || || || | |||||| ||||| | ||| || || | | |||| Sbjct 1354569 AATCTAAAAATTCAAATATATCTGAATGCCATGGTTCAATATAAACAGCAAAAGATCCTT 1354628 Query 131793 TGCGCTT---ACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGG 131849 | || || || ||||||| |||| | | ||| || | || | ||||| | Sbjct 1354629 TACGTTTTCCTCCACCTTGATCTACATATCTTGCAGTGTCATTAAAAACTCTTAACATAG 1354688 Query 131850 GCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGG--CTCTGAT 131907 | | ||||| || | |||||||||| | |||| || | || | |||| || Sbjct 1354689 GTACTAAACCATTAGATATTCCATTGGTACCTCTAATATA--AGAATTTTGTCCTCTTAT 1354746 Query 131908 TTTGTGAACGTTGAGTCCAATACCTCC-GCCGTATTTAGAGATTAGTGCGCATTTGGTTA 131966 | || || | ||||||||||| || || |||| |||| || |||| ||| Sbjct 1354747 GTCTTGTACTGCTACACCAATACCTCCTGCAGT-TTTACTAATTAAAGCACATTGTTTTA 1354805 Query 131967 GAGTGTTATAGATACCTTC 131985 |||| | | | |||||||| Sbjct 1354806 GAGTTTCAAAAATACCTTC 1354824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424930085986296