Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq6 111 2e-19 >seq6 Length=2947581 Score = 111 bits (122), Expect = 2e-19 Identities = 404/627 (64%), Gaps = 9/627 (1%) Strand=Plus/Plus Query 110720 GTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATT 110779 || |||||||||||| |||||||||| || | ||||||| || || || |||||||| Sbjct 1353641 GTATATGGTTCAAAGGATTCATTATTTCCAAGAATTTGTGAAGTAGATGCAGTTGGCATA 1353700 Query 110780 GGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCC 110839 ||||| | || | ||| | | ||| | || || | || | ||||| Sbjct 1353701 GGTGCTAATAATAATGAGTTTCTTAAACCATGCTTACGAATTTTAGCTTTTAATTCATCC 1353760 Query 110840 CAGTCG---TAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGG 110896 || || || ||| | || | | | |||||| ||||| || | | |||||| Sbjct 1353761 CAATCCCAATATTTGTTATCAACTTTAGCATTCCACATATCAAATTGTAATATTCCTTGG 1353820 Query 110897 GACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCA-CAGCT 110955 || ||| || | | ||| |||||| | || || |||||||||| ||| Sbjct 1353821 CTAGCTGGACTTCCTTGATAGGATTCATATGGTCCATGTATAGAAGCCAATTCAACAGA- 1353879 Query 110956 CGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTC 111015 | || | | || | ||||| |||||||| || | ||||| || || || | Sbjct 1353880 CATTTCTAAAGCAGCATAGTACATTGTTTCAAATATTCTTTTATTCAATTCTTTTGCAGC 1353939 Query 111016 ATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAA 111075 ||| || ||| ||| || | | || |||||| ||| || | ||||| ||||| | Sbjct 1353940 ATCAGATTCATATGGATATCTTAATAACATAAATGTATCTGCTAATCCTTGTACACCAAT 1353999 Query 111076 ACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCT 111135 ||||||||||||||||| |||| || || || | || || ||| ||||||| Sbjct 1354000 ACCAATAGGTCTGTGTCTAGTATTGGATGTTTTTGCCTCTTTGACTGGGTAATAATTTCT 1354059 Query 111136 GTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATA 111195 || || | | | || |||| |||||| ||| || || ||||||| | |||| | | Sbjct 1354060 TTCTATAATTTTATCTAAATTTCTGGTAATAATTTTAGTAATTTCATATAACTTTTTAAA 1354119 Query 111196 ATCAAAAGTGCGAGTCTCTTC--ATTGACATACTTTGGAAGGGCGATTGATGCCAAATTG 111253 || ||| | | | | | | || ||| | || | || || ||||||||||| Sbjct 1354120 ATTAAA--TTCTTTTTTTTCCAAATCTACAAATTTACATAAAGCTATAGATGCCAAATTA 1354177 Query 111254 CAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTC 111313 || ||||| ||||| ||| || |||| |||||| ||||||||| || Sbjct 1354178 CATACAGCAACTTCATCAGGGGATGTATATTCTATAATTTCACAACATAAGTTACTACAT 1354237 Query 111314 TTAATCGTCCCCAAATTCTTTTGGTTA 111340 ||||| || || ||||| ||||| ||| Sbjct 1354238 TTAATAGTACCTAAATTTTTTTGATTA 1354264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628025460616800