Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq6 138 1e-27 >seq6 Length=2947581 Score = 138 bits (152), Expect = 1e-27 Identities = 716/1131 (63%), Gaps = 15/1131 (1%) Strand=Plus/Minus Query 104315 TTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGT 104374 |||| || ||||| || || | || ||| | || || || ||||| |||||||| | Sbjct 1354917 TTCACCCATGCAACTCCTACATTATTTAATTCAGGGACGCCCAGACCACAAATGTCTTCT 1354858 Query 104375 TGCTTCCT--TATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGG 104432 || ||| | ||||| | ||| || | || || | ||||| | || |||||| | Sbjct 1354857 TGTTTCTTATTATCGATGA-AAGCAG-ATTCTATTGAAGGTATTTTTGAAACTCTAAAAC 1354800 Query 104433 AGTGTGCGCAAATC--TCAAAGTGGGCTGGGGGTATTGGGAT-GCACATCCATGATGTGA 104489 | ||||| ||| | ||| || | || |||||||| | ||| | || || | | Sbjct 1354799 AATGTGCTTTAATTAGTAAAACTG--CAGGAGGTATTGGTGTAGCAG-TACAAGACATAA 1354743 Query 104490 GAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGC 104549 ||| | || ||| |||| | || || ||||| ||| ||||| | | || ||| Sbjct 1354742 GAGGACAAAATTCTTATATTAGAGGTACCAATGGAATATCTAATGGTTTAGTACCTATGT 1354683 Query 104550 TTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGAT 104606 | | || ||||| | ||| || | |||||| |||||| ||| | || || |||| Sbjct 1354682 TAAGAGTTTTTAATGACACTGCAAGATATGTAGATCAAGGTGGAGGAAAACGTAAAGGAT 1354623 Query 104607 CTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTC 104666 || | || || ||| |||| |||||||| | ||||| | || || | || || | Sbjct 1354622 CTTTTGCTGTTTATATTGAACCATGGCATTCAGATATATTTGAATTTTTAGATTTAAGGA 1354563 Query 104667 TCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAG 104726 || || || | || || | || ||| | || | ||| | ||| |||| | Sbjct 1354562 AAAATCATGGAAAAGAAGAATTAAGAGCACGAGATTTATTTTATGCTGTATGGGTTCCTG 1354503 Query 104727 ATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGG 104786 |||| || |||||||||||| | || | | |||||| | || | |||||| | | Sbjct 1354502 ATCTTTTTATGAAGAGAGTTAAAGAAAATAAAAATTGGACCCTAATGTGTCCAAATGAAT 1354443 Query 104787 CACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGG 104846 || ||| | || | |||||| || |||||| | || || || || || | Sbjct 1354442 GTCCAGGTTTAAGTGAAACATGGGGTGAAGAATTTGAAAAATTATATACTAAATATGAAG 1354383 Query 104847 AAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCT-CAAG 104905 ||||| | || | || || | ||| ||| | ||| ||||| | ||| Sbjct 1354382 AAGAAAATATGGGAAAAAAAACAGTTCTTGCTCAAGATTTATGGTTTGCTATATTACAAA 1354323 Query 104906 TCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGT 104965 | |||| || || ||| |||||| ||| | || ||||| | ||||| || | Sbjct 1354322 GC-CAAATAGAAACAGGTGTACCATATATGTTATATAAAGATTCTTGTAATGCTAAATCT 1354264 Query 104966 AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTT 105025 |||||||| ||||| ||| || || || || | ||| ||||| | |||| | Sbjct 1354263 AATCAAAAAAATTTAGGTACTATTAAATGTAGTAACTTATGTTGTGAAATTATAGAATAT 1354204 Query 105026 ACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTG 105085 ||| | ||||| ||||| ||||| | ||||| || ||| | || | ||| Sbjct 1354203 ACATCCCCTGATGAAGTTGCTGTATGTAATTTGGCATCTATAGCTTTATGTAAATTTGTA 1354144 Query 105086 GATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACC 105145 ||| || | ||| |||| ||| | |||| | | ||| |||| |||| | | ||| Sbjct 1354143 GATTTGGAAAAAAAAGAATTTAATTTTAAAAAGTTATATGAAATTACTAAAATTATTACC 1354084 Query 105146 AAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCT 105205 | ||| || | | | |||| || ||||||| |||||| || | || | ||| Sbjct 1354083 AGAAATTTAGATAAAATTATAGAAAGAAATTATTACCCAGTCAAAGAGGCAAAAACATCC 1354024 Query 105206 AATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTT 105265 |||| |||||| | || |||||| | ||||| || || | || ||| ||| || | Sbjct 1354023 AATACTAGACACAGACCTATTGGTATTGGTGTACAAGGATTAGCAGATACATTTATGTTA 1353964 Query 105266 TGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACC 105325 | | | ||| ||| || || | || || ||| | ||| | |||||||| || Sbjct 1353963 TTAAGATATCCATATGAATCTGATGCTGCAAAAGAATTGAATAAAAGAATATTTGAAACA 1353904 Query 105326 ATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAA 105385 ||||| | || ||| | || | | || ||||| | |||| ||||||||| Sbjct 1353903 ATGTACTATGCTGCTTTAGAAATGTCTGTTGAATTGGCTTCTATACATGGACCATATGAA 1353844 Query 105386 ACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGG 105436 ||| | | || ||||||| ||||| | | ||||||||||||||| Sbjct 1353843 TCCTATCAAGGAAGTCCAGCTAGCCAAGGAATATTACAATTTGATATGTGG 1353793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583254726796920