Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq9 116 3e-21 >seq9 Length=776283 Score = 116 bits (128), Expect = 3e-21 Identities = 420/647 (65%), Gaps = 24/647 (4%) Strand=Plus/Minus Query 111657 TTTAATTTTTAGTTTTGGAAAGGGGGTAGGCTTTCGGGTAAGCTGTAATTGTAAAGGCTG 111716 |||||||| ||| |||| || || || ||| |||| || | || |||| | Sbjct 512150 TTTAATTTA-AGTGTTGGGAATGGATATGGTATTCTATTAAGTTGAATTTTTAAACTATC 512092 Query 111717 TATGTGATTTAAATAAACATGCGCATCTCCTATACAATGGATCAATTCCCAAGGCTCCAA 111776 |||||||| |||||||||||||| ||||| | || || ||||| ||| | ||| Sbjct 512091 GATGTGATTATTATAAACATGCGCATTTCCTAAAACGTGTATAAATTCGGCAGGTTGCAA 512032 Query 111777 ACCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCAC 111836 | | || ||||||||||| | || | | | ||| |||||| ||||| || || Sbjct 512031 ATTACAGACTTGTGCAATCATATGAGTAAAAATAGAATAAGAAGCAATATTAAAAGGTAC 511972 Query 111837 ACCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACAC 111896 ||||| || | ||| | || |||||||| | |||||||| ||| | | || Sbjct 511971 TCCTAGTCCTAAATCACATGACCTTTGATACATAATACATGATAATTTTCCATCGAAAAC 511912 Query 111897 ATAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATCCCATTCATAAAG----GGTC 111952 |||||||||||| | | |||||||||||| |||||||| || | ||| | Sbjct 511911 ATAAAATTGACATAAAATATGACAAGGAGGTAATGCCAT----TTGGTCAAGATCTTTTA 511856 Query 111953 C---CCATGCACACATGATCATCCTTCTGC-TGTAGCGATTATGTTCAATGTCGTGTATG 112008 | ||||||||||| | || ||||| | ||||| ||| || || ||| | ||| Sbjct 511855 CATTCCATGCACACAAAAGAATTCTTCTACTTGTAG-GATCATTTTTAATTAAATTTATT 511797 Query 112009 ACATTCAAGAGCTGGTCTATCCCTTTACCAGTATAATCCGCCTGACATCCAGTGTATGTT 112068 | ||| | || || | |||||| ||||| | || ||| ||||| || Sbjct 511796 ATATTTTTTAATTGATCAACACCTTTATTTTCATAATTATCATG-CAT-ATTTGTATATT 511739 Query 112069 --GCCCCATAGTGTCTCCATTGGAATCCATAAATAGGCCCCAGATCTCCCGGGGCTGTAT 112126 || || | ||||||||||| || ||||||||||| || | ||| || ||| Sbjct 511738 CAGCTCCGAAATGTCTCCATTGAAAACCATAAATAGGTCCTAAATCGTTAACTTCTCTAT 511679 Query 112127 CTGGAAATTGCTCTCTATT---CAACAAATCACTTCTAATATGAGGATTCCAAATCTTCA 112183 ||||| | |||||| || || || || || || || | ||| ||| | | Sbjct 511678 ---GAAATAATTTTCTATTATCTAAAAATTCCCTAGTACCATTAGCTTCCCATATCCTTA 511622 Query 112184 CTCCTTTAGATGATAACTCTCTTGCATTTGTGGATCCTCTAATAAACCATAGCAATTCTT 112243 | ||| | | | | | ||||||| ||||||||||||||| |||||||||| Sbjct 511621 CATTCTTATTTAACAGCGTATTACCATTTGTTTCTCCTCTAATAAACCAAAGCAATTCTT 511562 Query 112244 CCACAACCCCTTTCCAGTACACTCTTTTAGTAGTTAGCAGTGGAAAA 112290 | | || ||| | || | | | | || ||||||| | ||| ||| Sbjct 511561 CAATAATTCCTCTTAAGAATAATTTCTTTGTAGTTAATAATGGGAAA 511515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391941620894779