Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq169 111 1e-19 seq5 105 4e-18 >seq169 Length=6603 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34495 AACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCT 34554 ||||| || || | ||| || |||||||| || |||||||| || |||| |||| Sbjct 5340 AACACTAAGTGTAAGGTGGATTCTTTTTGAATATTGTAATCTGATAGAGTTCTTCCGTCC 5399 Query 34555 TCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCT 34614 || | |||||| |||||||||||||| | |||||||| || || | ||| || || ||| Sbjct 5400 TCTAATTGTTTTCCGGCAAATATTAATCTTTGTTGGTCAGGTGGAATTCCTTCTTTATCT 5459 Query 34615 GTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGT 34673 ||| ||||| |||||| | ||| ||||| || || || | || || || Sbjct 5460 -TGAATTTTTGCTTTAACATTCTCAATGGTGTCAGATGGTTCAACATCGAGAGTAATGGT 5518 Query 34674 TTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| || ||||| ||||| |||||||| ||||| Sbjct 5519 TTTTCCTGTTAATGTTTTAACAAAAATTTGCAT 5551 Score = 86.0 bits (94), Expect = 4e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | ||||| || || | || |||||||||||||| || ||||| Sbjct 5553 CCACCTCTTAGTCTTAACACTAAGTGTAATGTAGATTCCTTTTGAATGTTGTAGTCTGAT 5612 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||||| | ||||| | |||||| || ||||||||||| | |||||||| || || Sbjct 5613 AATGTTCTTCCATCTTCTAATTGTTTTCCAGCAAATATTAATCTTTGTTGGTCAGGTGGA 5672 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||| || || ||| ||| ||||| || || | ||| ||||| ||| || Sbjct 5673 ATTCCTTCTTTATCT-TGAATTTTTGCCTTTACATTCTCAATAGTGTCAGATGGCTCGAC 5731 Query 34659 TTCCACGGTTATCGTTTTACC 34679 || | |||||| ||||| || Sbjct 5732 GTCAAGGGTTATAGTTTTTCC 5752 >seq5 Length=2479031 Score = 105 bits (116), Expect = 4e-18 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||||||||| ||||||||||| | ||||| | ||||| | |||||| || |||||| Sbjct 2307634 TCCTTTTGAATATTATAATCTGATAATGTTCTTCCATCTTCTAATTGTTTTCCAGCAAAT 2307693 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 ||||| | ||||| || || || | ||| || || ||| ||| ||||| || || | Sbjct 2307694 ATTAATCTTTGTTGATCAGGTGGAATTCCTTCTTTATCT-TGAATTTTTGCCTTCACATT 2307752 Query 34636 -AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 ||| || || ||| || || | ||| || ||||| || ||||| ||||| || Sbjct 2307753 CTCAATCGTATCAGATGGCTCAACATCAAGGGTAATTGTTTTTCCAGTTAATGTTTTAAC 2307812 Query 34695 AAAAATCTGCATGTT 34709 |||||| ||||| || Sbjct 2307813 AAAAATTTGCATTTT 2307827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314726404806089