Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq169 149 5e-31 seq5 138 1e-27 >seq169 Length=6603 Score = 149 bits (164), Expect = 5e-31 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| | || || || | |||||||| || || ||||| || Sbjct 5551 ATGCAAATTTTTGTTAAAACATTAACAGGAAAAACCATTACTCTCGATGTTGAACCATCT 5492 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || ||| |||||||||||| |||||||| || ||||| || ||| Sbjct 5491 GACACCATTGAGAATGTTAAAGCAAAAATTCAAGATAAAGAAGGAATTCCACCTGACCAA 5432 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | ||||||| ||||| |||||||| || ||| | || | || |||||||| Sbjct 5431 CAAAGATTAATATTTGCCGGAAAACAATTAGAGGACGGAAGAACTCTATCAGATTACAAT 5372 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 |||||||| || || |||||||| || || || Sbjct 5371 ATTCAAAAAGAATCCACCTTACACTTAGTGTT 5340 Score = 118 bits (130), Expect = 9e-22 Identities = 133/178 (75%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 27022 CTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAG 27081 |||| || ||||| || || || || ||| | ||||||| || || ||||||||||| Sbjct 5745 CTATAACCCTTGACGTCGAGCCATCTGACACTATTGAGAATGTAAAGGCAAAAATTCAAG 5686 Query 27082 ACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAG 27141 | |||||||| || ||||| || ||||| | ||||||| || || |||||||| |||| Sbjct 5685 ATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATTTGCTGGAAAACAATTAGAAG 5626 Query 27142 ACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 | | || | || || ||||||||||||||||| || || ||||| || || || Sbjct 5625 ATGGAAGAACATTATCAGACTACAACATTCAAAAGGAATCTACATTACACTTAGTGTT 5568 >seq5 Length=2479031 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| | || || || | ||||| ||||| || || || || Sbjct 2307824 ATGCAAATTTTTGTTAAAACATTAACTGGAAAAACAATTACCCTTGATGTTGAGCCATCT 2307765 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||||| || || |||||||||||| |||||||| || ||||| |||||| Sbjct 2307764 GATACGATTGAGAATGTGAAGGCAAAAATTCAAGATAAAGAAGGAATTCCACCTGATCAA 2307705 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | ||||||| || || |||||||| ||||| | || | || ||||| || Sbjct 2307704 CAAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGAACATTATCAGATTATAAT 2307645 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||||||||||| || || ||||| ||||| Sbjct 2307644 ATTCAAAAGGAATCTACATTACACTTGGT 2307616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434913871412160