Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq6 134 2e-26 >seq6 Length=2947581 Score = 134 bits (148), Expect = 2e-26 Identities = 348/518 (67%), Gaps = 17/518 (3%) Strand=Plus/Minus Query 136381 CAGGAAAGGGAATACTTGCTGTTGATGAATCTACAAATACTTGTGGGAAAAGATTGGCTA 136440 ||||||||||||| | |||| ||||||||| ||| | || | ||||||||| | || Sbjct 1671480 CAGGAAAGGGAATTTTAGCTGCTGATGAATCAACACAAACCATTAAGAAAAGATTCGATA 1671421 Query 136441 GTATTGGAGTAGAAAATACAGAGGCAAATAGA-CAGGCATACAGAGGTATGTTATTTACC 136499 || | |||| || ||| | ||| ||| | || ||||||| | | |||||| Sbjct 1671420 ACATCAAATTAGAGAACACAATTGAAAACAGAGCTAGC-TACAGAGATTTATTATTTGGA 1671362 Query 136500 ACAGAGGGATTAGGTAATTATATTAGTGGTGCTATCTTATTTGAAGAAACACTATTTCAA 136559 || | |||||||| || | |||| || || || ||||||||||||||| |||||||| Sbjct 1671361 ACTAAAGGATTAGGAAAATTTATTTCAGGAGCAATTTTATTTGAAGAAACATTATTTCAA 1671302 Query 136560 GATCATGCTGATGGAGAAAGCATGATTGCAAAGTTAGAGAAGCAAGGAATTATACCAGGT 136619 | ||| | || | | ||| || ||| | || || ||||| |||||| Sbjct 1671301 AAGAATGAAGCAGGTGTACCAATGGTTAATTTATTACACAATGAAAATATTATTCCAGGT 1671242 Query 136620 ATCAAGGTAGATAAAGGATTA-AAACCATTAGTTGGTGCATTAGAGCATGAGACATATTG 136678 || || || |||||||| ||| | |||| | || | || | || | || Sbjct 1671241 ATTAAAGTCGATAAAGGTTTAGTTAACATTCCAT-GTAC---CGATGAAGAAAAATCAAC 1671186 Query 136679 TTCTGGATTAGATGGTCTAACAGAAAGA-GCAAGTGACTATTATGGTAGAGGTGCAAGAT 136737 | || |||||||| || |||||||| |||| || |||||| |||||||||| Sbjct 1671185 TCAAGGTTTAGATGGATTAGCAGAAAGATGCAA-AGAATATTATAAAGCTGGTGCAAGAT 1671127 Query 136738 TTGCTAAGTGGAGAGCAGTTCTACAAAT---TACAG---AAGATGGACCTTCTGATCTTG 136791 ||||||| |||||| ||||| || || ||||| ||| ||| |||| | Sbjct 1671126 TTGCTAAATGGAGAACAGTTTTAGTTATTGATACAGCCAAAGGAAAACCAACTGACTTAT 1671067 Query 136792 CCATTAGAGAAAATGCATGGGGTCTTGCTAGATATGC-TAGATCAGTTCAAGAGGCAGGT 136850 | ||| ||||| ||||||||| | ||||||||||| | ||| | ||| | | Sbjct 1671066 CAATTCAAGAAACTGCATGGGGATTAGCTAGATATGCATCTATCTG-TCAGCAAAATAGA 1671008 Query 136851 TTAGTTCCTATCATTGAACCAGAAATATTAATGGATGG 136888 |||||||| || ||||||| ||||| ||| ||||| Sbjct 1671007 TTAGTTCCAATTGTTGAACCTGAAATTTTAGCTGATGG 1670970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631420625264280